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| author |   Justin Lecher <jlec@gentoo.org> | 2011-06-02 10:39:46 +0200 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2011-06-02 10:39:46 +0200 |
| commit | 065a95be5ffc0c5b37c5f7b6b8aa89271247ab12 (patch) | |
| tree | a3d3622480be697d249ccf18a0def57b49f14908 /sci-chemistry/coot/files | |
| parent | [sci-misc/boinc-bin] Remove obsolete package version. (diff) | |
| download | sci-065a95be5ffc0c5b37c5f7b6b8aa89271247ab12.tar.gz sci-065a95be5ffc0c5b37c5f7b6b8aa89271247ab12.tar.bz2 sci-065a95be5ffc0c5b37c5f7b6b8aa89271247ab12.zip | |
Fixes for latest HEAD
(Portage version: 2.2.0_alpha37/git/Linux x86_64, signed Manifest commit with key 70EB7916)
Diffstat (limited to 'sci-chemistry/coot/files')
| -rw-r--r-- | sci-chemistry/coot/files/9999-align.patch | 29 |
1 files changed, 29 insertions, 0 deletions
diff --git a/sci-chemistry/coot/files/9999-align.patch b/sci-chemistry/coot/files/9999-align.patch new file mode 100644 index 000000000..17e57877d --- /dev/null +++ b/sci-chemistry/coot/files/9999-align.patch @@ -0,0 +1,29 @@ +Index: src/c-interface-mutate.cc +=================================================================== +--- src/c-interface-mutate.cc (revision 3528) ++++ src/c-interface-mutate.cc (working copy) +@@ -292,7 +292,9 @@ + PyObject *r = Py_False; + if (is_valid_model_molecule(imol)) { + std::pair<bool, std::string> p = +- graphics_info_t::molecules[imol].find_terminal_residue_type(chain_id, resno); ++ graphics_info_t::molecules[imol].find_terminal_residue_type(chain_id, resno, ++ graphics_info_t::alignment_wgap, ++ graphics_info_t::alignment_wspace); + if (p.first) { + r = PyString_FromString(p.second.c_str()); + } +Index: src/c-interface-validate.cc +=================================================================== +--- src/c-interface-validate.cc (revision 3528) ++++ src/c-interface-validate.cc (working copy) +@@ -1653,7 +1653,8 @@ + + if (is_valid_model_molecule(imol)) { + std::pair<bool, std::vector<coot::chain_mutation_info_container_t> > ar = +- graphics_info_t::molecules[imol].residue_mismatches(); ++ graphics_info_t::molecules[imol].residue_mismatches(graphics_info_t::alignment_wgap, ++ graphics_info_t::alignment_wspace); + if (ar.first) + r = PyList_New(0); + for (unsigned int ir=0; ir<ar.second.size(); ir++) { |