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| author |   Jauhien Piatlicki <jauhien@gentoo.org> | 2014-06-02 22:27:51 +0200 |
|---|---|---|
| committer | Jauhien Piatlicki <jauhien@gentoo.org> | 2014-06-02 22:27:51 +0200 |
| commit | 1e58b1ab68dc2345b4eb70e4324a151f5ae4d2d7 (patch) | |
| tree | f71a3d5006e68b3f2e1679769386bc6bc2246a11 /sci-libs/ghmm | |
| parent | sci-physics/openmx bumped to the version 3.7.8 (diff) | |
| download | sci-1e58b1ab68dc2345b4eb70e4324a151f5ae4d2d7.tar.gz sci-1e58b1ab68dc2345b4eb70e4324a151f5ae4d2d7.tar.bz2 sci-1e58b1ab68dc2345b4eb70e4324a151f5ae4d2d7.zip | |
sci-libs/ghmm: fix issue #223, patch applying failure
Diffstat (limited to 'sci-libs/ghmm')
| -rw-r--r-- | sci-libs/ghmm/ChangeLog | 6 | ||||
| -rw-r--r-- | sci-libs/ghmm/files/ghmm-9999-clapack.patch | 11 | ||||
| -rw-r--r-- | sci-libs/ghmm/files/ghmm-9999-respect.patch | 8 | ||||
| -rw-r--r-- | sci-libs/ghmm/ghmm-9999.ebuild | 1 |
4 files changed, 20 insertions, 6 deletions
diff --git a/sci-libs/ghmm/ChangeLog b/sci-libs/ghmm/ChangeLog index 886fd6a4c..1220db1bd 100644 --- a/sci-libs/ghmm/ChangeLog +++ b/sci-libs/ghmm/ChangeLog @@ -1,7 +1,11 @@ # ChangeLog for sci-libs/ghmm -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 02 Jun 2014; Jauhien Piatlicki <jauhien@gentoo.org> ghmm-9999.ebuild, + +files/ghmm-9999-clapack.patch, files/ghmm-9999-respect.patch: + fix issue #223 + 20 Dec 2013; Justin Lecher <jlec@gentoo.org> ghmm-9999.ebuild, +files/ghmm-9999-link.patch, +files/ghmm-9999-obsolete.patch, +files/ghmm-9999-out-of-source.patch, +files/ghmm-9999-respect.patch: diff --git a/sci-libs/ghmm/files/ghmm-9999-clapack.patch b/sci-libs/ghmm/files/ghmm-9999-clapack.patch new file mode 100644 index 000000000..d36cb2ab5 --- /dev/null +++ b/sci-libs/ghmm/files/ghmm-9999-clapack.patch @@ -0,0 +1,11 @@ +--- ghmm/matrixop.c ++++ ghmm/matrixop.c +@@ -45,7 +45,7 @@ + #endif + + #ifdef DO_WITH_ATLAS +-#include <clapack.h> ++#include <clapack/clapack.h> + #endif + + /*============================================================================*/ diff --git a/sci-libs/ghmm/files/ghmm-9999-respect.patch b/sci-libs/ghmm/files/ghmm-9999-respect.patch index 09c8721c9..cc70a0780 100644 --- a/sci-libs/ghmm/files/ghmm-9999-respect.patch +++ b/sci-libs/ghmm/files/ghmm-9999-respect.patch @@ -1,12 +1,10 @@ -Index: ghmmwrapper/setup.py -=================================================================== ---- ghmmwrapper/setup.py (revision 2332) -+++ ghmmwrapper/setup.py (working copy) +--- ghmmwrapper/setup.py ++++ ghmmwrapper/setup.py @@ -48,7 +48,6 @@ include_dirs = ['..'], library_dirs = ['../ghmm/.libs'], libraries = ['ghmm', 'm', 'pthread', 'xml2', 'z'], - extra_compile_args = ["-O2", "-pipe", "-Wall"], # -g might help debugging - depends = ['wrapper_alphabet.i', 'wrapper_cmodel.i', 'wrapper_cseq.i', + depends = ['wrapper_alphabet.i', 'wrapper_bayes.i', 'wrapper_cmodel.i', 'wrapper_cseq.i', 'wrapper_dmodel.i', 'wrapper_dpmodel.i', 'wrapper_dpseq.i', 'wrapper_dseq.i', 'wrapper_xmlfile.i'] diff --git a/sci-libs/ghmm/ghmm-9999.ebuild b/sci-libs/ghmm/ghmm-9999.ebuild index a8bcf5d5a..54b46f29c 100644 --- a/sci-libs/ghmm/ghmm-9999.ebuild +++ b/sci-libs/ghmm/ghmm-9999.ebuild @@ -34,6 +34,7 @@ S="${WORKDIR}/${PN}" ESVN_BOOTSTRAP="autotools-utils_src_prepare" PATCHES=( + "${FILESDIR}"/${P}-clapack.patch "${FILESDIR}"/${P}-out-of-source.patch "${FILESDIR}"/${P}-link.patch "${FILESDIR}"/${P}-respect.patch |