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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2018-01-29 16:29:09 +0100 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2018-01-29 16:29:09 +0100 |
| commit | 1a1e9755d0985ab7f3e9107be9125aead76d1b7c (patch) | |
| tree | e86703d10359455cabc1a34babfc15ed2df4f4d2 | |
| parent | sci-libs/tensorflow: new package (diff) | |
| download | sci-1a1e9755.tar.gz sci-1a1e9755.tar.bz2 sci-1a1e9755.zip | |
sci-biology/chiron: new package
Will need more work to get CPU- and GPU-based features enabled
at once, or will need two separate installs?
Package-Manager: Portage-2.3.20, Repoman-2.3.6
| -rw-r--r-- | sci-biology/chiron/chiron-9999.ebuild | 22 | ||||
| -rw-r--r-- | sci-biology/chiron/metadata.xml | 12 |
2 files changed, 34 insertions, 0 deletions
diff --git a/sci-biology/chiron/chiron-9999.ebuild b/sci-biology/chiron/chiron-9999.ebuild new file mode 100644 index 000000000..daf1c15b9 --- /dev/null +++ b/sci-biology/chiron/chiron-9999.ebuild @@ -0,0 +1,22 @@ +# Copyright 1999-2018 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python2_7 pypy ) + +inherit distutils-r1 eutils git-r3 + +DESCRIPTION="Basecaller for OxfordNanopore data using deep learning" +HOMEPAGE="https://github.com/haotianteng/chiron + https://www.biorxiv.org/content/early/2017/09/12/179531" +EGIT_REPO_URI="https://github.com/haotianteng/chiron" + +LICENSE="MPL-2.0" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND} + dev-python/h5py" diff --git a/sci-biology/chiron/metadata.xml b/sci-biology/chiron/metadata.xml new file mode 100644 index 000000000..138cb7705 --- /dev/null +++ b/sci-biology/chiron/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="person"> + <email>mmokrejs@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>sci-biology@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata> |