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| author |   Justin <jlec@gentoo.org> | 2015-08-17 12:52:46 +0200 |
|---|---|---|
| committer | Justin <jlec@gentoo.org> | 2015-08-17 12:52:46 +0200 |
| commit | 2cc9a8e0af4ccb684092318978cf22099d6be2b2 (patch) | |
| tree | 9e9d5bcfb6a7e4966dd2c0971554d7eabccf15bb | |
| parent | app-admin/eselect: Import changes from live ebuild (diff) | |
| parent | sci-biology/salmon: fix deps & version bump to 0.4.2 (diff) | |
| download | sci-2cc9a8e0af4ccb684092318978cf22099d6be2b2.tar.gz sci-2cc9a8e0af4ccb684092318978cf22099d6be2b2.tar.bz2 sci-2cc9a8e0af4ccb684092318978cf22099d6be2b2.zip | |
Merge pull request #462 from mschubert/salmon
sci-biology/salmon: fix deps & version bump to 0.4.2
| -rw-r--r-- | sci-biology/salmon/ChangeLog | 6 | ||||
| -rw-r--r-- | sci-biology/salmon/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/salmon/salmon-0.3.2.ebuild | 4 | ||||
| -rw-r--r-- | sci-biology/salmon/salmon-0.4.2.ebuild | 22 | ||||
| -rw-r--r-- | sci-biology/salmon/salmon-9999.ebuild | 4 |
5 files changed, 37 insertions, 0 deletions
diff --git a/sci-biology/salmon/ChangeLog b/sci-biology/salmon/ChangeLog index 9acc5c061..478ddfa79 100644 --- a/sci-biology/salmon/ChangeLog +++ b/sci-biology/salmon/ChangeLog @@ -2,6 +2,12 @@ # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Id$ +*salmon-0.4.2 (16 Aug 2015) + + 16 Aug 2015; Michael Schubert <mschu.dev@gmail.com> +salmon-0.4.2.ebuild, + salmon-0.3.2.ebuild, salmon-9999.ebuild: + sci-biology/salmon: fix deps & version bump to 0.4.2 + 05 Jun 2015; Justin Lecher <jlec@gentoo.org> metadata.xml: sci-biology/salmon: Add github to remote-id in metadata.xml diff --git a/sci-biology/salmon/Manifest b/sci-biology/salmon/Manifest index cef7a9cd2..df7ad78b6 100644 --- a/sci-biology/salmon/Manifest +++ b/sci-biology/salmon/Manifest @@ -1 +1,2 @@ DIST salmon-0.3.2.tar.gz 1674131 SHA256 e0c957f0bc612e1fd7d7c4383758396042b68ea08aeae024cadb5d63e6dd9cf2 SHA512 d9db133d8fb009a4b23251bce209a869644eb6139e0e4b9133f947999e0be4c30039f5cb8617dc4b73977cd690837abb407549a619ef82e6bb82577ff082becf WHIRLPOOL e2f8f636547c93fbf3fade454754352537bc5a9fce668b0989ca58f5f5b9ca8f2454077af5dfc948f0acf9c6c2a6bdd6995d481dc08fd0f3db938639435afc0f +DIST salmon-0.4.2.tar.gz 1711949 SHA256 702c4893a3c73a72bce68b2ff1283467f470df5c6be72c1b0fcb2470229d512b SHA512 28d823d3a97a46861972594d13737fe173583a0ac6dc2ebdc5f117e880493a057b34f8fea0d26fb2827d17ebcc38a06358dfea08db70f4a76c7fbe553f2b031d WHIRLPOOL bab133da989e10c19709c9a1ed8d8401b1e0e685fe5c2ebc75097b15b1670783c7747fd2137530426d892a2608c82d029bf82f94705a7a7052a425f179449700 diff --git a/sci-biology/salmon/salmon-0.3.2.ebuild b/sci-biology/salmon/salmon-0.3.2.ebuild index c276c9fdf..049344bbb 100644 --- a/sci-biology/salmon/salmon-0.3.2.ebuild +++ b/sci-biology/salmon/salmon-0.3.2.ebuild @@ -16,3 +16,7 @@ KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" IUSE="" PATCHES=( "${FILESDIR}"/${P}-no-boost-static.patch ) + +DEPEND="dev-libs/boost + dev-libs/jemalloc" +RDEPEND="${DEPEND}" diff --git a/sci-biology/salmon/salmon-0.4.2.ebuild b/sci-biology/salmon/salmon-0.4.2.ebuild new file mode 100644 index 000000000..c1021a6ae --- /dev/null +++ b/sci-biology/salmon/salmon-0.4.2.ebuild @@ -0,0 +1,22 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +inherit cmake-utils + +DESCRIPTION="Transcript-level quantification from RNA-seq reads using lightweight alignments" +HOMEPAGE="https://github.com/COMBINE-lab/salmon" +SRC_URI="https://github.com/COMBINE-lab/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +PATCHES=( "${FILESDIR}"/${PN}-0.3.2-no-boost-static.patch ) + +DEPEND="dev-libs/boost + dev-libs/jemalloc" +RDEPEND="${DEPEND}" diff --git a/sci-biology/salmon/salmon-9999.ebuild b/sci-biology/salmon/salmon-9999.ebuild index 2c3699a31..ab171cb59 100644 --- a/sci-biology/salmon/salmon-9999.ebuild +++ b/sci-biology/salmon/salmon-9999.ebuild @@ -17,3 +17,7 @@ KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" IUSE="" PATCHES=( "${FILESDIR}"/${PN}-0.3.2-no-boost-static.patch ) + +DEPEND="dev-libs/boost + dev-libs/jemalloc" +RDEPEND="${DEPEND}" |