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| author |   Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-01-19 11:08:12 +0100 |
|---|---|---|
| committer | Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-01-19 11:08:35 +0100 |
| commit | 33b9b9c2651f06e55e4fb8a3e4654d1d0ccc4afd (patch) | |
| tree | bb8ecd3bf2c2638f7a26fd6697096a0475516fc0 | |
| parent | sci-biology/reptile: remove pack, upstream gone (diff) | |
| download | sci-33b9b9c2651f06e55e4fb8a3e4654d1d0ccc4afd.tar.gz sci-33b9b9c2651f06e55e4fb8a3e4654d1d0ccc4afd.tar.bz2 sci-33b9b9c2651f06e55e4fb8a3e4654d1d0ccc4afd.zip | |
sci-biology/prokka: version bump. fix fetch
Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
| -rw-r--r-- | profiles/package.mask | 1 | ||||
| -rw-r--r-- | sci-biology/prokka/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/prokka/prokka-1.14.6.ebuild (renamed from sci-biology/prokka/prokka-1.11.ebuild) | 21 |
3 files changed, 13 insertions, 11 deletions
diff --git a/profiles/package.mask b/profiles/package.mask index 2abd24cac..a43ddc581 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -95,4 +95,3 @@ sci-biology/ORFcor sci-biology/pairagon sci-biology/polyphen sci-biology/primerD -sci-biology/prokka diff --git a/sci-biology/prokka/Manifest b/sci-biology/prokka/Manifest index 0e683ece1..e0285e5de 100644 --- a/sci-biology/prokka/Manifest +++ b/sci-biology/prokka/Manifest @@ -1 +1 @@ -DIST prokka-1.11.tar.gz 359226217 BLAKE2B 233c5234b839c0c18f03dcded2f89f2ad0bf8ccaceec1387fd6e5c9add4ab71698220031ed1d6cf6b38425bae924cd774fce5f622ea5e3fb01bf03fb30134692 SHA512 7b35d340ca07685886ff9ef97f0d40a28f05bc378a407a0349b06c8be9df005c4030b205a93985ec691fac4b6442a607f8723f3ca8f2066704f15b8667476034 +DIST prokka-1.14.6.tar.gz 112621657 BLAKE2B 3188d0a9dc6c62fa375a007950eaf91a7ff3fe6d610e89daaa8f8f911dd0035ac976cd3a2f4a14719b5c5e7d9a5bf7fdae64f838d5c54101ca8818cb2d0fd2c0 SHA512 96cc7490072d68242d4444c0842af7618f7ac132d00b008b8c4c1056d45a1f6f25c0599e7b74cd0477794bd88d88897cf57276d29c979ff1104f79f5bbf7c447 diff --git a/sci-biology/prokka/prokka-1.11.ebuild b/sci-biology/prokka/prokka-1.14.6.ebuild index 06cc2a630..b56fd143f 100644 --- a/sci-biology/prokka/prokka-1.11.ebuild +++ b/sci-biology/prokka/prokka-1.14.6.ebuild @@ -1,28 +1,26 @@ -# Copyright 1999-2015 Gentoo Foundation +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=7 DESCRIPTION="Prokaryotic whole genome annotation pipeline" -HOMEPAGE="http://www.bioinformatics.net.au/software.prokka.shtml" -SRC_URI="http://www.vicbioinformatics.com/prokka-"${PV}".tar.gz" -# 360MB +HOMEPAGE="https://vicbioinformatics.com/software.prokka.shtml" +SRC_URI="https://github.com/tseemann/prokka/archive/v${PV}.tar.gz -> ${P}.tar.gz" LICENSE="GPL-2" SLOT="0" KEYWORDS="~amd64" -IUSE="" -DEPEND="" -RDEPEND="${DEPEND} +RDEPEND=" sys-process/parallel sci-biology/bioperl sci-biology/prodigal || ( sci-biology/ncbi-tools++ sci-biology/ncbi-blast+ ) - sci-biology/hmmer + sci-biology/hmmer:* sci-biology/infernal sci-biology/exonerate sci-biology/barrnap" +DEPEND="${RDEPEND}" # sci-biology/minced # >=sci-biolohy/hmmer-3.1 # Aragorn @@ -31,3 +29,8 @@ RDEPEND="${DEPEND} # SignalP >= 3.0 # sequin # tbl2asn >= 23.0 from wget --mirror -nH -nd ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/tbl2asn/linux64.tbl2asn.gz + +src_install() { + default + dobin bin/prokka +} |