diff options
| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-12-02 23:52:44 +0100 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-12-02 23:52:44 +0100 |
| commit | 38ef4fac3f1c8bfb5044571b268200a0a1488969 (patch) | |
| tree | 51fe15361f8da34b81965b73ee41ef53130005ac | |
| parent | sci-biology/freebayes: note the many bundled deps we need to unbundle (diff) | |
| download | sci-38ef4fac.tar.gz sci-38ef4fac.tar.bz2 sci-38ef4fac.zip | |
dev-perl/Bio-EnsEMBL: new package to provide EnsEMBL Perl API
This is needed by sci-biology/ensembl-tools, do not miss the
official installation procedure at
http://www.ensembl.org/info/docs/api/api_installation.html
Package-Manager: portage-2.3.2
| -rw-r--r-- | dev-perl/Bio-EnsEMBL/Bio-EnsEMBL-9999.ebuild | 35 | ||||
| -rw-r--r-- | dev-perl/Bio-EnsEMBL/Manifest | 1 | ||||
| -rw-r--r-- | dev-perl/Bio-EnsEMBL/metadata.xml | 12 |
3 files changed, 48 insertions, 0 deletions
diff --git a/dev-perl/Bio-EnsEMBL/Bio-EnsEMBL-9999.ebuild b/dev-perl/Bio-EnsEMBL/Bio-EnsEMBL-9999.ebuild new file mode 100644 index 000000000..73e3a472e --- /dev/null +++ b/dev-perl/Bio-EnsEMBL/Bio-EnsEMBL-9999.ebuild @@ -0,0 +1,35 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +MODULE_AUTHOR="" +inherit perl-module + +DESCRIPTION="EnsEMBL Perl API aka ensembl-api exposing Bio::EnsEMBL::Registry" +SRC_URI="ftp://ftp.ensembl.org/pub/ensembl-api.tar.gz" + +#LICENSE="|| ( Artistic GPL-1+ )" +SLOT="0" +KEYWORDS="" +IUSE="" + +RDEPEND="" +DEPEND="${RDEPEND}" + +S="${WORKDIR}" + +src_install(){ + perl_set_version + insinto "${VENDOR_LIB}" # do not add "${PN}" so the the PERL path starts with Bio/ + find . -name t | xargs rm -rf || die + find . -name test.pl | xargs rm -f || die + find . -name \*.example | xargs rm -f || die + find . -name \*.json | xargs rm -f || die + find . -name README* | xargs rm -rf || die + find . -name \*.conf | xargs rm -f || die + find . -name travisci | xargs rm -rf || die + find . -name sql | xargs rm -rf || die + find . -name modules | while read d; do pushd "$d"; doins -r *; popd; done || die +} diff --git a/dev-perl/Bio-EnsEMBL/Manifest b/dev-perl/Bio-EnsEMBL/Manifest new file mode 100644 index 000000000..f3381f7c3 --- /dev/null +++ b/dev-perl/Bio-EnsEMBL/Manifest @@ -0,0 +1 @@ +DIST ensembl-api.tar.gz 58306750 SHA256 ca6361fd065f5a993e0c12a1fa76ddbd4a52e81db3a65c2a04e9049981392e08 SHA512 1a49175a631fced82a212cde5345c8c8d62d5aef474ae79b074a9a8c5931f4cf513f5dfc34172a6313d3899d86521a12b65aa592214b91075a55a8a44364be27 WHIRLPOOL cd4c56809fd8b57898b58bea03b5dbe011a5082b2a61f45b6dc59a81c42bc2e91b02554da3d8b3b30769a3ab2b4303f8deace1828c2ca008c2d5cb7b2a118366 diff --git a/dev-perl/Bio-EnsEMBL/metadata.xml b/dev-perl/Bio-EnsEMBL/metadata.xml new file mode 100644 index 000000000..f68a1b6fa --- /dev/null +++ b/dev-perl/Bio-EnsEMBL/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="person"> + <email>mmokrejs@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>sci-biology@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata> |