sci-biology/cd-hit-auxtools: remove pack, upstream gone

Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>

5 files changed, 0 insertions, 105 deletions

diff --git a/profiles/package.mask b/profiles/package.mask
index b30e95d7a..bfd691718 100644
--- a/profiles/package.mask
+++ b/profiles/package.mask
@@ -44,4 +44,3 @@ sci-biology/bambino
 sci-biology/BBmap
 sci-biology/beagle
 sci-biology/blue
-sci-biology/cd-hit-auxtools
diff --git a/sci-biology/cd-hit-auxtools/Manifest b/sci-biology/cd-hit-auxtools/Manifest
deleted file mode 100644
index 703087663..000000000
--- a/sci-biology/cd-hit-auxtools/Manifest
+++ /dev/null
@@ -1,2 +0,0 @@
-DIST cd-hit-auxtools-manual.html 27123 SHA256 a17d1ff54f061ced8b3f797238ee5596330cb2fdb237d8fbfdff7e2c47c06d14 SHA512 8b7b646ac63cb4cc888a2b3db0ef2e1feb215189b9a52ed5a760ad5dd1af4f0a0f7722b3fa7b634f8a84e3154622c4336401dfefc45fe614770917ef1d59429a WHIRLPOOL 1b8149b66353ce58f074f412a33726b583497da2b204377e9b639eb2082e78c442e68af3b9d6bcba324373755b75a4b3aa51516f5f771e7d65d14675e76916f6
-DIST cd-hit-auxtools-v0.5-2012-03-07.tgz 97230 BLAKE2B cbc3032dcf02d4919a44d976f7fe2faa8f767e96149bd6eab9aeef1e0a7231e96cef7a87bca9ba8417b87d4b2f28d0a554d863b4efc65882eff1ee7b890c4bfe SHA512 5b00ff4951c9f2b85b23bad7eae484c060f05df8a20c35bf1cff0bae770a6552b7ed19c90bbc36204ea3ba1722490c8ba654c7ec1b1d55f743afbc82be53ef5b
diff --git a/sci-biology/cd-hit-auxtools/cd-hit-auxtools-0.5.ebuild b/sci-biology/cd-hit-auxtools/cd-hit-auxtools-0.5.ebuild
deleted file mode 100644
index 3c3de8097..000000000
--- a/sci-biology/cd-hit-auxtools/cd-hit-auxtools-0.5.ebuild
+++ /dev/null
@@ -1,43 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit eutils flag-o-matic toolchain-funcs
-
-RELDATE="2012-03-07"
-RELEASE="${PN}-v${PV}-${RELDATE}"
-
-DESCRIPTION="Additional cd-hit itools: read-linker, cd-hit-lap and cd-hit-dup"
-HOMEPAGE="http://weizhong-lab.ucsd.edu/cd-hit/"
-SRC_URI="
-	http://cdhit.googlecode.com/files/${RELEASE}.tgz
-	http://weizhong-lab.ucsd.edu/cd-hit/wiki/doku.php?id=cd-hit-auxtools-manual -> cd-hit-auxtools-manual.html"
-
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-LICENSE="GPL-2"
-IUSE="doc openmp"
-
-S="${WORKDIR}"/${RELEASE}
-
-pkg_setup() {
-	 use openmp && ! tc-has-openmp && die "Please switch to an openmp compatible compiler"
-}
-
-src_prepare() {
-	tc-export CXX
-	use openmp || append-flags -DNO_OPENMP
-	epatch "${FILESDIR}"/${PV}-gentoo.patch
-}
-
-src_compile() {
-	local myconf=
-	use openmp && myconf="openmp=yes"
-	emake ${myconf}
-}
-
-src_install() {
-	dobin read-linker cd-hit-lap cd-hit-dup
-	use doc && dodoc "${DISTDIR}"/cd-hit-auxtools-manual.html
-}
diff --git a/sci-biology/cd-hit-auxtools/files/0.5-gentoo.patch b/sci-biology/cd-hit-auxtools/files/0.5-gentoo.patch
deleted file mode 100644
index 3977cbee3..000000000
--- a/sci-biology/cd-hit-auxtools/files/0.5-gentoo.patch
+++ /dev/null
@@ -1,47 +0,0 @@
---- Makefile.ori	2014-06-01 20:25:53.000000000 +0200
-+++ Makefile	2014-06-01 20:27:15.000000000 +0200
-@@ -1,8 +1,8 @@
- 
--CC = g++
-+CXX = g++
- 
--CFLAGS = -Wall -Wno-unused -I. -Imintlib
--LFLAGS = -fPIC
-+CXXFLAGS = -I. -Imintlib
-+LDFLAGS = -fPIC
- 
- 
- UNAME = $(shell uname)
-@@ -16,9 +16,9 @@
- endif
- 
- ifeq ($(debug),yes)
--CFLAGS += -ggdb
-+CiXXFLAGS +=
- else
--CFLAGS += -O2
-+CXXFLAGS +=
- endif
- 
- 
-@@ -32,16 +32,16 @@
- .SUFFIXES: .c .obj .cpp .cc .cxx .C
- 
- .cxx.o:
--	$(CC) -c $(CFLAGS) -o $@ $<
-+	$(CXX) -c $(CXXFLAGS) -o $@ $<
- 
- cd-hit-dup: $(OBJECTS) cdhit-dup.o
--	$(CC) $(LFLAGS) $(OBJECTS) cdhit-dup.o -o cd-hit-dup
-+	$(CXX) $(LDFLAGS) $(OBJECTS) cdhit-dup.o -o cd-hit-dup
- 
- cd-hit-lap: $(OBJECTS) cdhit-lap.o
--	$(CC) $(LFLAGS) $(OBJECTS) cdhit-lap.o -o cd-hit-lap
-+	$(CXX) $(LDFLAGS) $(OBJECTS) cdhit-lap.o -o cd-hit-lap
- 
- read-linker: $(OBJECTS) read-linker.o
--	$(CC) $(LFLAGS) $(OBJECTS) read-linker.o -o read-linker
-+	$(CXX) $(LDFLAGS) $(OBJECTS) read-linker.o -o read-linker
- 
- clean:
- 	rm $(OBJECTS) cdhit-dup.o cdhit-lap.o read-linker.o
diff --git a/sci-biology/cd-hit-auxtools/metadata.xml b/sci-biology/cd-hit-auxtools/metadata.xml
deleted file mode 100644
index 138cb7705..000000000
--- a/sci-biology/cd-hit-auxtools/metadata.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="person">
-		<email>mmokrejs@fold.natur.cuni.cz</email>
-		<name>Martin Mokrejs</name>
-	</maintainer>
-	<maintainer type="project">
-		<email>sci-biology@gentoo.org</email>
-		<name>Gentoo Biology Project</name>
-	</maintainer>
-</pkgmetadata>