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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2018-01-24 21:58:04 +0100 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2018-01-24 21:58:04 +0100 |
| commit | 3f6ffb94adc1d3f7209d7ac33edb1fe0165bd487 (patch) | |
| tree | caa3c7e9d9e781785b4e55b106281a9ae9359c10 | |
| parent | sci-biology/pilon-bin: Drop the scala dependency for binary build (diff) | |
| download | sci-3f6ffb94.tar.gz sci-3f6ffb94.tar.bz2 sci-3f6ffb94.zip | |
sci-biology/nanopolish: update compile procedure and deps
Package-Manager: Portage-2.3.19, Repoman-2.3.6
| -rw-r--r-- | sci-biology/nanopolish/nanopolish-9999.ebuild | 6 |
1 files changed, 3 insertions, 3 deletions
diff --git a/sci-biology/nanopolish/nanopolish-9999.ebuild b/sci-biology/nanopolish/nanopolish-9999.ebuild index 92c5f41d3..cea5cce27 100644 --- a/sci-biology/nanopolish/nanopolish-9999.ebuild +++ b/sci-biology/nanopolish/nanopolish-9999.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2017 Gentoo Foundation +# Copyright 1999-2018 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 EAPI=6 @@ -21,7 +21,7 @@ IUSE="" # The bundled version of htslib in is 1.2.1 as of now although 1.5.1 already exists DEPEND=">=sci-libs/hdf5-1.8.14[threads] >=dev-cpp/eigen-3.2.5 - sci-libs/htslib:0 + >=sci-libs/htslib-1.4:0 sci-libs/fast5" RDEPEND="${DEPEND} sci-biology/biopython" @@ -34,7 +34,7 @@ src_prepare(){ src_compile(){ # >=gcc-4.8 but <gcc-7 is needed # https://github.com/jts/nanopolish/issues/145 - emake HDF5="noinstall" EIGEN="nofetch" HTS_LIB=-lhts HTS_INCLUDE=-I/usr/include/htslib EIGEN_INCLUDE=-I/usr/include/eigen3 # TODO: FAST5_INCLUDE=-I/usr/include/fast5 + emake HDF5="noinstall" EIGEN="noinstall" HTS="noinstall" HTS_LIB=-lhts HTS_INCLUDE=-I/usr/include/htslib EIGEN_INCLUDE=-I/usr/include/eigen3 # TODO: FAST5_INCLUDE=-I/usr/include/fast5 } src_install(){ |