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authorMartin Mokrejš <mmokrejs@fold.natur.cuni.cz>2015-04-28 14:53:31 +0200
committerMartin Mokrejš <mmokrejs@fold.natur.cuni.cz>2015-04-28 14:53:31 +0200
commit5cbf89b2f0459c333ffae9e526a95e40931137b4 (patch)
treec923e721293d260e7e189f4f945c937caf7909b1
parentsci-biology/stacks: commented out sys-cluster/openmpi DEPENDency (diff)
downloadsci-5cbf89b2.tar.gz
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sci-5cbf89b2.zip
sci-biology/tophat: try to introduce all-recursive target to make upstream 'make all' call happy
Package-Manager: portage-2.2.18
-rw-r--r--sci-biology/tophat/ChangeLog8
-rw-r--r--sci-biology/tophat/tophat-2.0.14.ebuild2
2 files changed, 8 insertions, 2 deletions
diff --git a/sci-biology/tophat/ChangeLog b/sci-biology/tophat/ChangeLog
index a262a0b4c..6339ca9a4 100644
--- a/sci-biology/tophat/ChangeLog
+++ b/sci-biology/tophat/ChangeLog
@@ -1,7 +1,12 @@
# ChangeLog for sci-biology/tophat
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/tophat/ChangeLog,v 1.14 2015/04/07 14:35:24 jlec Exp $
+ 28 Apr 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ tophat-2.0.14.ebuild:
+ sci-biology/tophat: try to introduce all-recursive target to make upstream
+ 'make all' call happy
+
17 Oct 2014; Sergey Popov <pinkbyte@gentoo.org> tophat-1.0.12.ebuild:
Non-maintainer commit: fix building, approved by Justin Lecher
@@ -66,4 +71,3 @@
07 Dec 2009; Andrey Kislyuk <weaver@gentoo.org> +metadata.xml,
+tophat-1.0.12.ebuild:
Import from Science overlay and version bump. Thanks to Philippe Veber.
-
diff --git a/sci-biology/tophat/tophat-2.0.14.ebuild b/sci-biology/tophat/tophat-2.0.14.ebuild
index 09b7ce8f6..1e48d7d4b 100644
--- a/sci-biology/tophat/tophat-2.0.14.ebuild
+++ b/sci-biology/tophat/tophat-2.0.14.ebuild
@@ -49,6 +49,8 @@ src_configure() {
}
src_install() {
+ # introduce empty all-recursive: target in tophat-2.0.14_build/src/Makefile (BUG: does not replace?)
+ sed -e "s#^all: all-am#all: all-am\nall-recursive: all#g" -i src/Makefile* || die
autotools-utils_src_install
python_fix_shebang "${ED}"/usr/bin/tophat
}