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| author |   Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-02-01 12:19:09 +0100 |
|---|---|---|
| committer | Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-02-01 12:19:09 +0100 |
| commit | 601aa9b78c9e572dd6676cf00942de9e1c0ec2b0 (patch) | |
| tree | 360c634fa802033dd59b88513f29bc06f9a3f054 | |
| parent | sci-biology/jigsaw: define correct compile and install phases (diff) | |
| download | sci-601aa9b7.tar.gz sci-601aa9b7.tar.bz2 sci-601aa9b7.zip | |
sci-biology/mgblast: EAPI bump
Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
| -rw-r--r-- | sci-biology/mgblast/mgblast-0.1.ebuild | 29 |
1 files changed, 9 insertions, 20 deletions
diff --git a/sci-biology/mgblast/mgblast-0.1.ebuild b/sci-biology/mgblast/mgblast-0.1.ebuild index 354836e22..3a2d3d7a6 100644 --- a/sci-biology/mgblast/mgblast-0.1.ebuild +++ b/sci-biology/mgblast/mgblast-0.1.ebuild @@ -1,7 +1,7 @@ # Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=7 DESCRIPTION="Customized version of megablast from TIGR Gene Indices project" HOMEPAGE="http://compbio.dfci.harvard.edu/tgi/software/" @@ -9,14 +9,12 @@ SRC_URI="ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/tgicl/mgblast.tar.gz LICENSE="Artistic" SLOT="0" -KEYWORDS="" # upstream binary is provided by sci-biology/tgicl currently -#KEYWORDS="~amd64 ~x86" -IUSE="" +KEYWORDS="" DEPEND="sci-biology/ncbi-tools" RDEPEND="${DEPEND}" -S="${WORKDIR}" +S="${WORKDIR}/${PN}" # mgblast needs old version of ncbi-tools unpacked and compiled during its own compilation # from newer tools you need to include blfmtutl.h but the next error is no go for me: @@ -26,20 +24,11 @@ S="${WORKDIR}" src_prepare(){ # mgblast cannot be compiled against newer ncbi-tools but let's try - mv mgblast/makefile mgblast/Makefile 2>/dev/null || true - sed -i 's#/usr/local/projects/tgi/ncbitoolkit/ncbi#/usr#' mgblast/Makefile || die - sed -i 's#NCBIDIR = /mylocal/src/ncbi#NCBIDIR = /usr#' mgblast/Makefile || die - sed -i 's#NCBI_INCDIR = .*#NCBI_INCDIR = /usr/include/ncbi#' mgblast/Makefile || die - sed -i 's#NCBI_LIBDIR = .*#NCBI_LIBDIR = /usr/lib#' mgblast/Makefile || die # a PATH to NCBI-TOOLKIT (/usr/lib) while NOT /usr/lib/ncbi-tools++ ! - sed -i "s#-I-#-iquote#" mgblast/Makefile || die -} - -src_compile(){ - cd "${S}"/mgblast || die + mv makefile Makefile 2>/dev/null || true + sed -i -e 's#/usr/local/projects/tgi/ncbitoolkit/ncbi#/usr#' \ + -e's#NCBIDIR = /mylocal/src/ncbi#NCBIDIR = /usr#' \ + -e's#NCBI_INCDIR = .*#NCBI_INCDIR = /usr/include/ncbi#' \ + -e 's#NCBI_LIBDIR = .*#NCBI_LIBDIR = /usr/lib#' \ + -e "s#-I-#-iquote#" Makefile || die # a PATH to NCBI-TOOLKIT (/usr/lib) while NOT /usr/lib/ncbi-tools++ ! default } - -src_install(){ - cd "${S}"/mgblast || die - dobin mgblast -} |