diff options
| author |   Aisha Tammy <gentoo@aisha.cc> | 2020-09-21 20:00:58 -0400 |
|---|---|---|
| committer | Aisha Tammy <gentoo@aisha.cc> | 2020-09-21 20:01:17 -0400 |
| commit | 6e9bf8f7648c9df1f8b59e8c1631148b490f3aac (patch) | |
| tree | 6a7381de01dca95e603c84d69f64eaca8bfae04d | |
| parent | dev-perl/Data-Types: drop package (diff) | |
| download | sci-6e9bf8f7648c9df1f8b59e8c1631148b490f3aac.tar.gz sci-6e9bf8f7648c9df1f8b59e8c1631148b490f3aac.tar.bz2 sci-6e9bf8f7648c9df1f8b59e8c1631148b490f3aac.zip | |
dev-perl/Bio-DB-HTS: drop package
present in ::gentoo
Package-Manager: Portage-3.0.7, Repoman-3.0.1
Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
| -rw-r--r-- | dev-perl/Bio-DB-HTS/Bio-DB-HTS-2.3.ebuild | 35 | ||||
| -rw-r--r-- | dev-perl/Bio-DB-HTS/Manifest | 1 | ||||
| -rw-r--r-- | dev-perl/Bio-DB-HTS/metadata.xml | 12 |
3 files changed, 0 insertions, 48 deletions
diff --git a/dev-perl/Bio-DB-HTS/Bio-DB-HTS-2.3.ebuild b/dev-perl/Bio-DB-HTS/Bio-DB-HTS-2.3.ebuild deleted file mode 100644 index 1e7e6ceca..000000000 --- a/dev-perl/Bio-DB-HTS/Bio-DB-HTS-2.3.ebuild +++ /dev/null @@ -1,35 +0,0 @@ -# Copyright 1999-2016 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -# this is https://metacpan.org/pod/Bio::DB::HTS and https://github.com/Ensembl/Bio-DB-HTS -# this is not https://metacpan.org/pod/Bio::HTS -MODULE_AUTHOR="RISHIDEV" -inherit perl-module multilib toolchain-funcs - -DESCRIPTION="Enable rapid access to bgzipped FASTA files" - -#LICENSE="|| ( Artistic GPL-1 GPL-2 GPL-3 )" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -RDEPEND="" -DEPEND="${RDEPEND} - dev-perl/Module-Build - sci-libs/htslib[static-libs]" - -SRC_TEST="do" - -src_prepare(){ - # https://github.com/Ensembl/Bio-HTS/issues/30 - export HTSLIB_LIBDIR="${EPREFIX}"/"$(get_libdir)" # currently ignored - export HTSLIB_INCDIR="${EPREFIX}"/usr/include/htslib # currently ignored - export HTSLIB_DIR="${EPREFIX}"/usr # useless, Build.PL will not invent /usr/lib64/ is the correct answer - perl-module_src_prepare -} - -# is the below -rpath acceptable? -# x86_64-pc-linux-gnu-gcc -shared -O2 -pipe -maes -mpclmul -mpopcnt -mavx -march=native -Wl,-O1 -Wl,--as-needed -o blib/arch/auto/Bio/DB/HTS/HTS.so lib/Bio/DB/HTS.o -L/usr/lib -Wl,-rpath,/usr/lib -lhts -lpthread -lz -# x86_64-pc-linux-gnu-gcc -shared -O2 -pipe -maes -mpclmul -mpopcnt -mavx -march=native -Wl,-O1 -Wl,--as-needed -o blib/arch/auto/Bio/DB/HTS/Faidx/Faidx.so lib/Bio/DB/HTS/Faidx.o -L/usr/lib -Wl,-rpath,/usr/lib -lhts -lpthread -lz diff --git a/dev-perl/Bio-DB-HTS/Manifest b/dev-perl/Bio-DB-HTS/Manifest deleted file mode 100644 index c71a491f1..000000000 --- a/dev-perl/Bio-DB-HTS/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST Bio-DB-HTS-2.3.tar.gz 2187131 BLAKE2B 51b40ad8842faa1891c61cb47daaf2af1df9bff7a831ef7d289908ebfc65a3e3ed46e592c2cb33ae7b895be652749b66217b220846269b7294e0edbc902bd1ae SHA512 837da08534fab6f16f889068cfd67e9bb051b592307c47503c707fb263690e952e4292473bfee54664b109312f8188bd2b6726a7669980f6d129ddd6042be8ed diff --git a/dev-perl/Bio-DB-HTS/metadata.xml b/dev-perl/Bio-DB-HTS/metadata.xml deleted file mode 100644 index 138cb7705..000000000 --- a/dev-perl/Bio-DB-HTS/metadata.xml +++ /dev/null @@ -1,12 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="person"> - <email>mmokrejs@fold.natur.cuni.cz</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> -</pkgmetadata> |