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| author |   Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2018-04-01 22:46:38 +0200 |
|---|---|---|
| committer | Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2018-04-01 22:46:38 +0200 |
| commit | 71cdc2ea8a2ce9b5fbf6aaf315c1d7c7016805b9 (patch) | |
| tree | 7d368caa149f53f9b0324bfd87bf2ef6c02e4311 | |
| parent | sci-biology/genepop: switch to https (diff) | |
| download | sci-71cdc2ea.tar.gz sci-71cdc2ea.tar.bz2 sci-71cdc2ea.zip | |
sci-biology/diamond: new package
Do not know if the SSE instruction calls can be protected
with CPU_FLAGS or similar. See page 2 in diamond_manual.pdf .
Package-Manager: Portage-2.3.27, Repoman-2.3.9
| -rw-r--r-- | sci-biology/diamond/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/diamond/diamond-0.9.19.ebuild | 27 | ||||
| -rw-r--r-- | sci-biology/diamond/metadata.xml | 12 |
3 files changed, 40 insertions, 0 deletions
diff --git a/sci-biology/diamond/Manifest b/sci-biology/diamond/Manifest new file mode 100644 index 000000000..6e784d485 --- /dev/null +++ b/sci-biology/diamond/Manifest @@ -0,0 +1 @@ +DIST v0.9.19.tar.gz 402840 BLAKE2B 81d1586028f16fe01400da49322339fcb1da053d6291276d5b5821ea67ff16b2778f6779743cb783c08ad3d597f32b63382fcc84a60a07eea8f7b4882c3b9733 SHA512 a08dcf9148814cb8b9289813aa678a7cff5ee2703fe39dda8f792a56b96ea6dfd3153c16f8e5a73acbce0ff33ead26575da6cb8c298408427809ffcc5b2f1224 diff --git a/sci-biology/diamond/diamond-0.9.19.ebuild b/sci-biology/diamond/diamond-0.9.19.ebuild new file mode 100644 index 000000000..fde9b9080 --- /dev/null +++ b/sci-biology/diamond/diamond-0.9.19.ebuild @@ -0,0 +1,27 @@ +# Copyright 1999-2018 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit toolchain-funcs cmake-utils + +DESCRIPTION="Alternative of blastp/blastx searches using DNA short reads through protein db" +HOMEPAGE="http://ab.inf.uni-tuebingen.de/software/diamond + https://github.com/bbuchfink/diamond" +SRC_URI="https://github.com/bbuchfink/diamond/archive/v${PV}.tar.gz" +# EGIT_REPO_URI="https://github.com/bbuchfink/diamond.git" + +LICENSE="AGPL-3" # diamond_manual.pdf says AGPL but src/COPYING used to say BSD? +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" +# uses SSE instructions, SSSE3 and POPCNT + +DEPEND="" +RDEPEND="${DEPEND}" + +# use cmake -DBUILD_STATIC=ON to create a statically linked binary +src_install(){ + cmake-utils_src_install + dodoc README.rst diamond_manual.pdf +} diff --git a/sci-biology/diamond/metadata.xml b/sci-biology/diamond/metadata.xml new file mode 100644 index 000000000..138cb7705 --- /dev/null +++ b/sci-biology/diamond/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="person"> + <email>mmokrejs@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>sci-biology@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata> |