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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-04-03 19:47:49 +0200 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-04-03 19:47:49 +0200 |
| commit | 9e0134a54a52511520a2adc08d58a9304d130294 (patch) | |
| tree | ddc220a75cbfa3fba31b1ee7f1ea3af18cd8dce9 | |
| parent | sci-biology/MolBioLib: does not build, contacted upstream (diff) | |
| download | sci-9e0134a54a52511520a2adc08d58a9304d130294.tar.gz sci-9e0134a54a52511520a2adc08d58a9304d130294.tar.bz2 sci-9e0134a54a52511520a2adc08d58a9304d130294.zip | |
sci-biology/prinseq-lite: new package, needs more perl modules
Package-Manager: portage-2.2.28
| -rw-r--r-- | sci-biology/prinseq-lite/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/prinseq-lite/metadata.xml | 12 | ||||
| -rw-r--r-- | sci-biology/prinseq-lite/prinseq-lite-0.20.4.ebuild | 36 |
3 files changed, 49 insertions, 0 deletions
diff --git a/sci-biology/prinseq-lite/Manifest b/sci-biology/prinseq-lite/Manifest new file mode 100644 index 000000000..2565d2a25 --- /dev/null +++ b/sci-biology/prinseq-lite/Manifest @@ -0,0 +1 @@ +DIST prinseq-lite-0.20.4.tar.gz 494859 SHA256 9b5e0dce3b7f02f09e1cc7e8a2dd77c0b133e5e35529d570ee901f53ebfeb56f SHA512 f0f920de72e52cf94e22a12631e9a90fc926ceba93139d29772f6e0f60737a96b38af56adfc38f242d18d360bcd0ac4fadaa444414d17601eb281baab4b0e9b2 WHIRLPOOL cfbdecc8f0fe7f63a27178e119933781295765c503f4691fed438b059acfcb7f84a0e8d1aff611266f6adde28bd06e3acd37f2b064a4fa1e94e636484e4d6356 diff --git a/sci-biology/prinseq-lite/metadata.xml b/sci-biology/prinseq-lite/metadata.xml new file mode 100644 index 000000000..f68a1b6fa --- /dev/null +++ b/sci-biology/prinseq-lite/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="person"> + <email>mmokrejs@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>sci-biology@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/prinseq-lite/prinseq-lite-0.20.4.ebuild b/sci-biology/prinseq-lite/prinseq-lite-0.20.4.ebuild new file mode 100644 index 000000000..b7ae2fb76 --- /dev/null +++ b/sci-biology/prinseq-lite/prinseq-lite-0.20.4.ebuild @@ -0,0 +1,36 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +DESCRIPTION="Describe, trim, reformat and convert to or form FASTA/FASTQ files" +HOMEPAGE="http://prinseq.sourceforge.net/" +SRC_URI="https://sourceforge.net/projects/prinseq/files/standalone/${P}.tar.gz" + +LICENSE="GPL-3+" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND} + virtual/perl-Getopt-Long + virtual/perl-File-Temp + dev-perl/Digest-MD5-File" +# Cwd +# Pod::Usage +# Fcntl qw(:flock SEEK_END) +# List::Util qw(sum min max) + +# prinseq-graphs.pl needs in addition +# https://sourceforge.net/projects/prinseq/files/README.txt +# JSON +# Cairo +# Statistics::PCA +# perl-core/MIME-Base64 + +src_install(){ + dobin *.pl + dodoc README +} |