sci-libs/atlas: drop package

present in ::gentoo

Package-Manager: Portage-3.0.7, Repoman-3.0.1
Signed-off-by: Aisha Tammy <gentoo@aisha.cc>

10 files changed, 0 insertions, 1723 deletions

diff --git a/sci-libs/atlas/Manifest b/sci-libs/atlas/Manifest
deleted file mode 100644
index 3c284b351..000000000
--- a/sci-libs/atlas/Manifest
+++ /dev/null
@@ -1,8 +0,0 @@
-DIST atlas3.10.1.tar.bz2 4900179 BLAKE2B cf84660064b2a6888de5fd2691c559cfed4ebfaff9fa1a8b7f17009a03e193e78dcc616152978fd518510bfe02f9ece4ed4436efd0d627c1bc3d24d25086618a SHA512 027c8eea79bc584a4586e198fd9cc0ef7fffda3983082c11c2cf618837a24ba25cb26a831f55c35ac9a425e1b4bd1f379c62d99ef0c4e060bc4b1de59f3cf5fc
-DIST atlas3.10.2.tar.bz2 4904923 BLAKE2B e2fb0d307907549644cb678c32c4befce7ce6809c348a11fa6084e17d696da8681b3388dd63d8bdee6040999d9ab38a75f1788b42640121a536eb5f13e6f8939 SHA512 9fe04cfa1f89449db047d1a4659a656964d13117c783cbbe43344eb32555736f037d9cd30c5ae1514c08ad5b8949a3982d7fe102d707ddb62288e76b2607fbb1
-DIST atlas3.10.3.tar.bz2 5156852 BLAKE2B cd3880a6d0c43b5840d4da26ac996cc9fe7615fc996229193ef1f936daa2c54c5465643def19f59dd5c481c447176e2ba3cf85d38c0b5008c2dc1bc18be0e65b SHA512 bf17306f09f2aa973cb776e2c9eacfb2409ad4d95d19802e1c4e0597d0a099fccdb5eaafe273c2682a41e41a3c6fabc8bbba4ce03180cffea40ede5df1d1f56e
-DIST atlas3.11.38.tar.bz2 5399435 BLAKE2B ad8928ad58b8399b167bd26ba914efe5e4c99d49c78d69647fb1aea0c609159539da0f995c213b55a6f9f3628f729c91bf7db824992cc6727258edbdd1204be7 SHA512 4ca54b741228523d344bae86ef3ac8c7d54cbb610624d1db1403c59aa5cbcb4b2af509ea435204bf8f65d823349314013d8cc1494243723ce9fa89e9fc2802ce
-DIST atlas3.11.39.tar.bz2 5821852 BLAKE2B c1a511c9728af8ae7b4731493f8af6ab653cceb0f107e44f79fa6a676b8e47ef076739711dc40a496157aca2c4116db00663382745082a116b2a8493cb824d46 SHA512 bdb64e2a0a7ce4142182a5e6cdb52d44f6e99963392b5daa4b0ea1659c8b6fff93b61119ce83386c4e81b1cd63009df334aa95971a7b0a5c6eb27537a05855e9
-DIST lapack-3.5.0.tgz 6313139 BLAKE2B c23a35f107cfc5c887491fd148c1c76851a4580c98ad86aff9c391ac3d393c31ba67427ed445fe821c7666418e9fcf19523a3a668f8009337508994cf1a68c04 SHA512 b948a0a0db032bda455ec4f519d4e89e4c29e29cecb5b6258ca61f68faaeeac9fdf4ece5c39ffcd0154c5505facbc392c7d09c8348b1d60bdd2685153ab2543f
-DIST lapack-3.6.0.tgz 6792324 BLAKE2B 438f3376b63b38ef0fe70f6becac847816f3a11c01f5ab237dc0d941792ceb54dbd2f8dc22d56286f5dab3499289ed94e67521ea951a98973c9640abc294ad6c SHA512 bc50441d415ef8896dd7626d77c6104184b996e758704366288089f03d4c99d068e33153b0d13305310886017e5d2e716130f812a95cfcad36ef37fe20417ab8
-DIST lapack-3.7.0.tgz 7359812 BLAKE2B 20aa42e22d8c920d1360afe41ceec7b36f6cd5fbe43ca9d7848ef7cc45a64a0314cb1321941c1a7c03654f41e28ec805445882ded0ca0ea07674e70b66cba6b5 SHA512 e4f4c7d0ba8a096eeb813160c6dbcdd535647df6b2ad5beac9181908158956b31d1a9554ec9b9836fd44fe7404c1f377b297cbb20d744f20d70e357fd246c91b
diff --git a/sci-libs/atlas/atlas-3.10.1-r2.ebuild b/sci-libs/atlas/atlas-3.10.1-r2.ebuild
deleted file mode 100644
index 7a4a1d6e4..000000000
--- a/sci-libs/atlas/atlas-3.10.1-r2.ebuild
+++ /dev/null
@@ -1,270 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-FORTRAN_NEEDED=fortran
-
-inherit alternatives-2 eutils fortran-2 multilib toolchain-funcs versionator
-
-LAPACKP=lapack-3.5.0.tgz
-
-DESCRIPTION="Automatically Tuned Linear Algebra Software"
-HOMEPAGE="http://math-atlas.sourceforge.net/"
-SRC_URI="mirror://sourceforge/math-atlas/${PN}${PV}.tar.bz2
-	fortran? ( lapack? ( http://www.netlib.org/lapack/${LAPACKP} ) )"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="doc fortran generic lapack static-libs threads"
-
-RDEPEND=""
-DEPEND="${RDEPEND}"
-
-S="${WORKDIR}/ATLAS"
-
-pkg_setup() {
-	local _cpufreq
-	for _cpufreq in /sys/devices/system/cpu/cpu*/cpufreq/scaling_governor; do
-		if [ -f ${_cpufreq} ]; then
-			if ! grep -q performance ${_cpufreq}; then
-				echo 2> /dev/null performance > ${_cpufreq} || \
-					die "${PN} needs all cpu set to performance"
-			fi
-		fi
-	done
-	use fortran && fortran-2_pkg_setup
-}
-
-src_prepare() {
-	epatch "${FILESDIR}"/${PN}-3.10.0-x32-support.patch
-}
-
-src_configure() {
-	# hack needed to trick the flaky gcc detection
-	local mycc="$(type -P $(tc-getCC))"
-	[[ ${mycc} == *gcc* ]] && mycc=gcc
-	atlas_configure() {
-		local myconf=(
-			--prefix="${ED}/usr"
-			--libdir="${ED}/usr/$(get_libdir)"
-			--incdir="${ED}/usr/include"
-			--cc="$(tc-getCC)"
-			"-D c -DWALL"
-			"-C acg '${mycc}'"
-			"-F acg '${CFLAGS}'"
-			"-Ss pmake '\$(MAKE) ${MAKEOPTS}'"
-		)
-
-		# OpenMP shown to decreased performance over POSIX threads
-		# (at least in 3.9.x, see atlas-dev mailing list)
-		if use threads; then
-			if use generic; then # 2 threads is most generic
-				myconf+=( "-t 2" "-Si omp 0" )
-			else
-				myconf+=( "-t -1" "-Si omp 0" )
-			fi
-		else
-			myconf+=( "-t  0" "-Si omp 0" )
-		fi
-
-		if use amd64 || use ppc64 || use sparc; then
-			if [ ${ABI} = amd64 ] || [ ${ABI} = ppc64 ] || [ ${ABI} = sparc64 ] ; then
-				myconf+=( "-b 64" )
-			elif [ ${ABI} = x86 ] || [ ${ABI} = ppc ] || [ ${ABI} = sparc32 ] ; then
-				myconf+=( "-b 32" )
-			elif [ ${ABI} = x32 ] ; then
-				myconf+=( "-b 48" )
-			else
-				myconf+=( "-b 64" )
-			fi
-		elif use ppc || use x86; then
-			myconf+=( "-b 32" )
-		elif use ia64; then
-			myconf+=( "-b 64" )
-		fi
-		if use fortran; then
-			myconf+=(
-				"-C if '$(type -P $(tc-getFC))'"
-				"-F if '${FFLAGS}'"
-			)
-			if use lapack; then
-				myconf+=(
-					"-Si latune 1"
-					"--with-netlib-lapack-tarfile=${DISTDIR}/${LAPACKP}"
-				)
-			else
-				myconf+=( "-Si latune 0" )
-			fi
-		else
-			myconf+=( "-Si latune 0" "--nof77" )
-		fi
-		# generic stuff found by make make xprint_enums in atlas build dir
-		# basically assuming sse2+sse1 and 2 threads max
-		use generic && use x86   && myconf+=( "-V 384 -A 13")
-		use generic && use amd64 && myconf+=( "-V 384 -A 24")
-
-		local confdir="${S}_${1}"; shift
-		myconf+=( $@ )
-		mkdir "${confdir}" && cd "${confdir}"
-		# for debugging
-		echo ${myconf[@]} > myconf.out
-		"${S}"/configure ${myconf[@]} || die "configure in ${confdir} failed"
-	}
-
-	atlas_configure shared "-Fa alg -fPIC" ${EXTRA_ECONF}
-	use static-libs && atlas_configure static ${EXTRA_ECONF}
-}
-
-src_compile() {
-	atlas_compile() {
-		pushd "${S}_${1}" > /dev/null
-		# atlas does its own parallel builds
-		emake -j1 build
-		cd lib
-		emake libclapack.a
-		[[ -e libptcblas.a ]] && emake libptclapack.a
-		popd > /dev/null
-	}
-
-	atlas_compile shared
-	use static-libs && atlas_compile static
-}
-
-src_test() {
-	cd "${S}_shared"
-	emake -j1 check time
-}
-
-# transform a static archive into a shared library and install them
-# atlas_install_libs <mylib.a> [extra link flags]
-atlas_install_libs() {
-	local libname=$(basename ${1%.*})
-	einfo "Installing ${libname}"
-	local soname=${libname}.so.$(get_major_version)
-	shift
-	pushd "${S}_shared"/lib > /dev/null
-	${LINK:-$(tc-getCC)} ${LDFLAGS} -shared -Wl,-soname=${soname} \
-		-Wl,--whole-archive ${libname}.a -Wl,--no-whole-archive \
-		"$@" -o ${soname} || die "Creating ${soname} failed"
-	dolib.so ${soname}
-	ln -s ${soname} ${soname%.*}
-	dosym ${soname} /usr/$(get_libdir)/${soname%.*}
-	popd > /dev/null
-	use static-libs && dolib.a "${S}_static"/lib/${libname}.a
-}
-
-# create and install a pkgconfig file
-# atlas_install_pc <libname> <pkg name> [extra link flags]
-atlas_install_pc() {
-	local libname=${1} ; shift
-	local pcname=${1} ; shift
-	cat <<-EOF > ${pcname}.pc
-		prefix=${EPREFIX}/usr
-		libdir=\${prefix}/$(get_libdir)
-		includedir=\${prefix}/include
-		Name: ${pcname}
-		Description: ${PN} ${pcname}
-		Version: ${PV}
-		URL: ${HOMEPAGE}
-		Libs: -L\${libdir} -l${libname} $@
-		Libs.private: -L\${libdir} -latlas -lm ${PTLIBS}
-		Cflags: -I\${includedir}/${PN}
-		${PCREQ}
-	EOF
-	insinto /usr/$(get_libdir)/pkgconfig
-	doins ${pcname}.pc
-}
-
-src_install() {
-	cd "${S}_shared/lib"
-	# rename to avoid collision with other packages
-	local l
-	for l in {,c}{blas,lapack}; do
-		if [[ -e lib${l}.a ]]; then
-			mv lib{,atl}${l}.a
-			use static-libs && mv "${S}"_static/lib/lib{,atl}${l}.a
-		fi
-	done
-
-	[[ -e libptcblas.a ]] && PTLIBS="-lpthread"
-
-	# atlas
-	atlas_install_libs libatlas.a -lm ${PTLIBS}
-
-	# cblas
-	atlas_install_libs libatlcblas.a -lm -L. -latlas
-	atlas_install_pc atlcblas atlas-cblas
-	alternatives_for cblas atlas 0 \
-		/usr/$(get_libdir)/pkgconfig/cblas.pc atlas-cblas.pc \
-		/usr/include/cblas.h atlas/cblas.h
-
-	# cblas threaded
-	if [[ -e libptcblas.a ]]; then
-		atlas_install_libs libptcblas.a -lm -L. -latlas ${PTLIBS}
-		atlas_install_pc ptcblas atlas-cblas-threads
-		alternatives_for cblas atlas-threads 0 \
-			/usr/$(get_libdir)/pkgconfig/cblas.pc atlas-cblas-threads.pc \
-			/usr/include/cblas.h atlas/cblas.h
-	fi
-
-	if use lapack; then
-		PCREQ="Requires: cblas"
-		# clapack
-		atlas_install_libs libatlclapack.a -lm -L. -latlas -latlcblas
-		atlas_install_pc atlclapack atlas-clapack
-
-		# clapack threaded
-		if [[ -e libptclapack.a ]]; then
-			atlas_install_libs libptclapack.a -lm -L. -latlas -lptcblas ${PTLIBS}
-			atlas_install_pc ptclapack atlas-clapack-threads
-		fi
-	fi
-
-	if use fortran; then
-		LINK=$(tc-getF77) PCREQ=
-
-		# blas
-		atlas_install_libs libf77blas.a -lm -L. -latlas
-		atlas_install_pc f77blas atlas-blas
-		alternatives_for blas atlas 0 \
-			/usr/$(get_libdir)/pkgconfig/blas.pc atlas-blas.pc
-
-		# blas threaded
-		if [[ -e libptf77blas.a ]]; then
-			atlas_install_libs libptf77blas.a -lm -L. -latlas ${PTLIBS}
-			atlas_install_pc ptf77blas atlas-blas-threads
-			alternatives_for blas atlas-threads 0 \
-				/usr/$(get_libdir)/pkgconfig/blas.pc atlas-blas-threads.pc
-		fi
-
-		if use lapack; then
-			PCREQ="Requires: blas cblas"
-			# lapack
-			atlas_install_libs libatllapack.a \
-				-lm -L. -latlas -latlcblas -lf77blas
-			atlas_install_pc atllapack atlas-lapack
-			alternatives_for lapack atlas 0 \
-				/usr/$(get_libdir)/pkgconfig/lapack.pc atlas-lapack.pc
-			# lapack threaded
-			if [[ -e libptlapack.a ]]; then
-				atlas_install_libs libptlapack.a \
-					-lm -L. -latlas -lptcblas -lptf77blas ${PTLIBS}
-				atlas_install_pc ptlapack atlas-lapack-threads
-				alternatives_for lapack atlas-threads 0 \
-					/usr/$(get_libdir)/pkgconfig/lapack.pc atlas-lapack-threads.pc
-			fi
-		fi
-	fi
-
-	cd "${S}"
-	insinto /usr/include/${PN}
-	doins include/*.h
-
-	cd "${S}/doc"
-	dodoc INDEX.txt AtlasCredits.txt ChangeLog
-	use doc && dodoc atlas*pdf cblas.pdf cblasqref.pdf
-	use doc && use fortran && dodoc f77blas*pdf
-	use doc && use fortran && use lapack && dodoc *lapack*pdf
-}
diff --git a/sci-libs/atlas/atlas-3.10.2.ebuild b/sci-libs/atlas/atlas-3.10.2.ebuild
deleted file mode 100644
index 5e480dd3e..000000000
--- a/sci-libs/atlas/atlas-3.10.2.ebuild
+++ /dev/null
@@ -1,272 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-FORTRAN_NEEDED=fortran
-
-inherit alternatives-2 eutils fortran-2 multilib toolchain-funcs versionator
-
-LAPACKP=lapack-3.6.0.tgz
-
-DESCRIPTION="Automatically Tuned Linear Algebra Software"
-HOMEPAGE="http://math-atlas.sourceforge.net/"
-SRC_URI="mirror://sourceforge/math-atlas/${PN}${PV}.tar.bz2
-	fortran? ( lapack? ( http://www.netlib.org/lapack/${LAPACKP} ) )"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="doc fortran generic lapack static-libs threads"
-
-RDEPEND=""
-DEPEND="${RDEPEND}"
-
-S="${WORKDIR}/ATLAS"
-
-pkg_setup() {
-	local _cpufreq
-	for _cpufreq in /sys/devices/system/cpu/cpu*/cpufreq/scaling_governor; do
-		if [ -f ${_cpufreq} ]; then
-			if ! grep -q performance ${_cpufreq}; then
-				echo 2> /dev/null performance > ${_cpufreq} || \
-					die "${PN} needs all cpu set to performance"
-			fi
-		fi
-	done
-	use fortran && fortran-2_pkg_setup
-}
-
-src_prepare() {
-	epatch \
-		"${FILESDIR}"/${PN}-3.10.0-x32-support.patch \
-		"${FILESDIR}"/${P1}format-security.patch
-}
-
-src_configure() {
-	# hack needed to trick the flaky gcc detection
-	local mycc="$(type -P $(tc-getCC))"
-	[[ ${mycc} == *gcc* ]] && mycc=gcc
-	atlas_configure() {
-		local myconf=(
-			--prefix="${ED}/usr"
-			--libdir="${ED}/usr/$(get_libdir)"
-			--incdir="${ED}/usr/include"
-			--cc="$(tc-getCC)"
-			"-D c -DWALL"
-			"-C acg '${mycc}'"
-			"-F acg '${CFLAGS}'"
-			"-Ss pmake '\$(MAKE) ${MAKEOPTS}'"
-		)
-
-		# OpenMP shown to decreased performance over POSIX threads
-		# (at least in 3.9.x, see atlas-dev mailing list)
-		if use threads; then
-			if use generic; then # 2 threads is most generic
-				myconf+=( "-t 2" "-Si omp 0" )
-			else
-				myconf+=( "-t -1" "-Si omp 0" )
-			fi
-		else
-			myconf+=( "-t  0" "-Si omp 0" )
-		fi
-
-		if use amd64 || use ppc64 || use sparc; then
-			if [ ${ABI} = amd64 ] || [ ${ABI} = ppc64 ] || [ ${ABI} = sparc64 ] ; then
-				myconf+=( "-b 64" )
-			elif [ ${ABI} = x86 ] || [ ${ABI} = ppc ] || [ ${ABI} = sparc32 ] ; then
-				myconf+=( "-b 32" )
-			elif [ ${ABI} = x32 ] ; then
-				myconf+=( "-b 48" )
-			else
-				myconf+=( "-b 64" )
-			fi
-		elif use ppc || use x86; then
-			myconf+=( "-b 32" )
-		elif use ia64; then
-			myconf+=( "-b 64" )
-		fi
-		if use fortran; then
-			myconf+=(
-				"-C if '$(type -P $(tc-getFC))'"
-				"-F if '${FFLAGS}'"
-			)
-			if use lapack; then
-				myconf+=(
-					"-Si latune 1"
-					"--with-netlib-lapack-tarfile=${DISTDIR}/${LAPACKP}"
-				)
-			else
-				myconf+=( "-Si latune 0" )
-			fi
-		else
-			myconf+=( "-Si latune 0" "--nof77" )
-		fi
-		# generic stuff found by make make xprint_enums in atlas build dir
-		# basically assuming sse2+sse1 and 2 threads max
-		use generic && use x86   && myconf+=( "-V 384 -A 13")
-		use generic && use amd64 && myconf+=( "-V 384 -A 24")
-
-		local confdir="${S}_${1}"; shift
-		myconf+=( $@ )
-		mkdir "${confdir}" && cd "${confdir}"
-		# for debugging
-		echo ${myconf[@]} > myconf.out
-		"${S}"/configure ${myconf[@]} || die "configure in ${confdir} failed"
-	}
-
-	atlas_configure shared "-Fa alg -fPIC" ${EXTRA_ECONF}
-	use static-libs && atlas_configure static ${EXTRA_ECONF}
-}
-
-src_compile() {
-	atlas_compile() {
-		pushd "${S}_${1}" > /dev/null
-		# atlas does its own parallel builds
-		emake -j1 build
-		cd lib
-		emake libclapack.a
-		[[ -e libptcblas.a ]] && emake libptclapack.a
-		popd > /dev/null
-	}
-
-	atlas_compile shared
-	use static-libs && atlas_compile static
-}
-
-src_test() {
-	cd "${S}_shared"
-	emake -j1 check time
-}
-
-# transform a static archive into a shared library and install them
-# atlas_install_libs <mylib.a> [extra link flags]
-atlas_install_libs() {
-	local libname=$(basename ${1%.*})
-	einfo "Installing ${libname}"
-	local soname=${libname}.so.$(get_major_version)
-	shift
-	pushd "${S}_shared"/lib > /dev/null
-	${LINK:-$(tc-getCC)} ${LDFLAGS} -shared -Wl,-soname=${soname} \
-		-Wl,--whole-archive ${libname}.a -Wl,--no-whole-archive \
-		"$@" -o ${soname} || die "Creating ${soname} failed"
-	dolib.so ${soname}
-	ln -s ${soname} ${soname%.*}
-	dosym ${soname} /usr/$(get_libdir)/${soname%.*}
-	popd > /dev/null
-	use static-libs && dolib.a "${S}_static"/lib/${libname}.a
-}
-
-# create and install a pkgconfig file
-# atlas_install_pc <libname> <pkg name> [extra link flags]
-atlas_install_pc() {
-	local libname=${1} ; shift
-	local pcname=${1} ; shift
-	cat <<-EOF > ${pcname}.pc
-		prefix=${EPREFIX}/usr
-		libdir=\${prefix}/$(get_libdir)
-		includedir=\${prefix}/include
-		Name: ${pcname}
-		Description: ${PN} ${pcname}
-		Version: ${PV}
-		URL: ${HOMEPAGE}
-		Libs: -L\${libdir} -l${libname} $@
-		Libs.private: -L\${libdir} -latlas -lm ${PTLIBS}
-		Cflags: -I\${includedir}/${PN}
-		${PCREQ}
-	EOF
-	insinto /usr/$(get_libdir)/pkgconfig
-	doins ${pcname}.pc
-}
-
-src_install() {
-	cd "${S}_shared/lib"
-	# rename to avoid collision with other packages
-	local l
-	for l in {,c}{blas,lapack}; do
-		if [[ -e lib${l}.a ]]; then
-			mv lib{,atl}${l}.a
-			use static-libs && mv "${S}"_static/lib/lib{,atl}${l}.a
-		fi
-	done
-
-	[[ -e libptcblas.a ]] && PTLIBS="-lpthread"
-
-	# atlas
-	atlas_install_libs libatlas.a -lm ${PTLIBS}
-
-	# cblas
-	atlas_install_libs libatlcblas.a -lm -L. -latlas
-	atlas_install_pc atlcblas atlas-cblas
-	alternatives_for cblas atlas 0 \
-		/usr/$(get_libdir)/pkgconfig/cblas.pc atlas-cblas.pc \
-		/usr/include/cblas.h atlas/cblas.h
-
-	# cblas threaded
-	if [[ -e libptcblas.a ]]; then
-		atlas_install_libs libptcblas.a -lm -L. -latlas ${PTLIBS}
-		atlas_install_pc ptcblas atlas-cblas-threads
-		alternatives_for cblas atlas-threads 0 \
-			/usr/$(get_libdir)/pkgconfig/cblas.pc atlas-cblas-threads.pc \
-			/usr/include/cblas.h atlas/cblas.h
-	fi
-
-	if use lapack; then
-		PCREQ="Requires: cblas"
-		# clapack
-		atlas_install_libs libatlclapack.a -lm -L. -latlas -latlcblas
-		atlas_install_pc atlclapack atlas-clapack
-
-		# clapack threaded
-		if [[ -e libptclapack.a ]]; then
-			atlas_install_libs libptclapack.a -lm -L. -latlas -lptcblas ${PTLIBS}
-			atlas_install_pc ptclapack atlas-clapack-threads
-		fi
-	fi
-
-	if use fortran; then
-		LINK=$(tc-getF77) PCREQ=
-
-		# blas
-		atlas_install_libs libf77blas.a -lm -L. -latlas
-		atlas_install_pc f77blas atlas-blas
-		alternatives_for blas atlas 0 \
-			/usr/$(get_libdir)/pkgconfig/blas.pc atlas-blas.pc
-
-		# blas threaded
-		if [[ -e libptf77blas.a ]]; then
-			atlas_install_libs libptf77blas.a -lm -L. -latlas ${PTLIBS}
-			atlas_install_pc ptf77blas atlas-blas-threads
-			alternatives_for blas atlas-threads 0 \
-				/usr/$(get_libdir)/pkgconfig/blas.pc atlas-blas-threads.pc
-		fi
-
-		if use lapack; then
-			PCREQ="Requires: blas cblas"
-			# lapack
-			atlas_install_libs libatllapack.a \
-				-lm -L. -latlas -latlcblas -lf77blas
-			atlas_install_pc atllapack atlas-lapack
-			alternatives_for lapack atlas 0 \
-				/usr/$(get_libdir)/pkgconfig/lapack.pc atlas-lapack.pc
-			# lapack threaded
-			if [[ -e libptlapack.a ]]; then
-				atlas_install_libs libptlapack.a \
-					-lm -L. -latlas -lptcblas -lptf77blas ${PTLIBS}
-				atlas_install_pc ptlapack atlas-lapack-threads
-				alternatives_for lapack atlas-threads 0 \
-					/usr/$(get_libdir)/pkgconfig/lapack.pc atlas-lapack-threads.pc
-			fi
-		fi
-	fi
-
-	cd "${S}"
-	insinto /usr/include/${PN}
-	doins include/*.h
-
-	cd "${S}/doc"
-	dodoc INDEX.txt AtlasCredits.txt ChangeLog
-	use doc && dodoc atlas*pdf cblas.pdf cblasqref.pdf
-	use doc && use fortran && dodoc f77blas*pdf
-	use doc && use fortran && use lapack && dodoc *lapack*pdf
-}
diff --git a/sci-libs/atlas/atlas-3.10.3.ebuild b/sci-libs/atlas/atlas-3.10.3.ebuild
deleted file mode 100644
index 131790147..000000000
--- a/sci-libs/atlas/atlas-3.10.3.ebuild
+++ /dev/null
@@ -1,279 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-FORTRAN_NEEDED=fortran
-
-inherit alternatives-2 eutils fortran-2 multilib toolchain-funcs versionator
-
-LAPACKP=lapack-3.6.0.tgz
-
-DESCRIPTION="Automatically Tuned Linear Algebra Software"
-HOMEPAGE="http://math-atlas.sourceforge.net/"
-SRC_URI="mirror://sourceforge/math-atlas/${PN}${PV}.tar.bz2
-	fortran? ( lapack? ( http://www.netlib.org/lapack/${LAPACKP} ) )"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="+deprecated doc +fortran generic +lapack static-libs threads"
-
-REQUIRED_USE="
-	deprecated? ( lapack )
-	lapack? ( fortran )"
-
-S="${WORKDIR}/ATLAS"
-
-pkg_setup() {
-	local _cpufreq
-	for _cpufreq in /sys/devices/system/cpu/cpu*/cpufreq/scaling_governor; do
-		if [ -f ${_cpufreq} ]; then
-			if ! grep -q performance ${_cpufreq}; then
-				echo 2> /dev/null performance > ${_cpufreq} || \
-					die "${PN} needs all cpu set to performance"
-			fi
-		fi
-	done
-	use fortran && fortran-2_pkg_setup
-}
-
-src_prepare() {
-	epatch \
-		"${FILESDIR}"/${PN}-3.10.0-x32-support.patch \
-		"${FILESDIR}"/${P1}format-security.patch
-}
-
-src_configure() {
-	# hack needed to trick the flaky gcc detection
-	local mycc="$(type -P $(tc-getCC))"
-	[[ ${mycc} == *gcc* ]] && mycc=gcc
-	atlas_configure() {
-		local myconf=(
-			--prefix="${ED}/usr"
-			--libdir="${ED}/usr/$(get_libdir)"
-			--incdir="${ED}/usr/include"
-			--cc="$(tc-getCC)"
-			"-D c -DWALL"
-			"-C acg '${mycc}'"
-			"-F acg '${CFLAGS}'"
-			"-Ss pmake '\$(MAKE) ${MAKEOPTS}'"
-		)
-
-		# OpenMP shown to decreased performance over POSIX threads
-		# (at least in 3.9.x, see atlas-dev mailing list)
-		if use threads; then
-			if use generic; then # 2 threads is most generic
-				myconf+=( "-t 2" "-Si omp 0" )
-			else
-				myconf+=( "-t -1" "-Si omp 0" )
-			fi
-		else
-			myconf+=( "-t  0" "-Si omp 0" )
-		fi
-
-		if use amd64 || use ppc64 || use sparc; then
-			if [ ${ABI} = amd64 ] || [ ${ABI} = ppc64 ] || [ ${ABI} = sparc64 ] ; then
-				myconf+=( "-b 64" )
-			elif [ ${ABI} = x86 ] || [ ${ABI} = ppc ] || [ ${ABI} = sparc32 ] ; then
-				myconf+=( "-b 32" )
-			elif [ ${ABI} = x32 ] ; then
-				myconf+=( "-b 48" )
-			else
-				myconf+=( "-b 64" )
-			fi
-		elif use ppc || use x86; then
-			myconf+=( "-b 32" )
-		elif use ia64; then
-			myconf+=( "-b 64" )
-		fi
-		if use fortran; then
-			myconf+=(
-				"-C if '$(type -P $(tc-getFC))'"
-				"-F if '${FFLAGS}'"
-			)
-			if use lapack; then
-				myconf+=(
-					"-Si latune 1"
-					"--with-netlib-lapack-tarfile=${DISTDIR}/${LAPACKP}"
-				)
-			else
-				myconf+=( "-Si latune 0" )
-			fi
-		else
-			myconf+=( "-Si latune 0" "--nof77" )
-		fi
-		# generic stuff found by make make xprint_enums in atlas build dir
-		# basically assuming sse2+sse1 and 2 threads max
-		use generic && use x86   && myconf+=( "-V 384 -A 13")
-		use generic && use amd64 && myconf+=( "-V 384 -A 24")
-
-		local confdir="${S}_${1}"; shift
-		myconf+=( $@ )
-		mkdir "${confdir}" && cd "${confdir}" || die
-		# for debugging
-		echo ${myconf[@]} > myconf.out
-		"${S}"/configure ${myconf[@]} || die "configure in ${confdir} failed"
-
-		if use deprecated; then
-			echo "BUILD_DEPRECATED=1" >> src/lapack/reference/make.inc.example || die
-		fi
-	}
-
-	atlas_configure shared "-Fa alg -fPIC" ${EXTRA_ECONF}
-	use static-libs && atlas_configure static ${EXTRA_ECONF}
-}
-
-src_compile() {
-	atlas_compile() {
-		pushd "${S}_${1}" > /dev/null || die
-		# atlas does its own parallel builds
-		emake -j1 build
-		cd lib || die
-		emake libclapack.a
-		[[ -e libptcblas.a ]] && emake libptclapack.a
-		popd > /dev/null || die
-	}
-
-	atlas_compile shared
-	use static-libs && atlas_compile static
-}
-
-src_test() {
-	cd "${S}_shared" || die
-	emake -j1 check time
-}
-
-# transform a static archive into a shared library and install them
-# atlas_install_libs <mylib.a> [extra link flags]
-atlas_install_libs() {
-	local libname=$(basename ${1%.*})
-	einfo "Installing ${libname}"
-	local soname=${libname}.so.$(get_major_version)
-	shift
-	pushd "${S}_shared"/lib > /dev/null
-	${LINK:-$(tc-getCC)} ${LDFLAGS} -shared -Wl,-soname=${soname} \
-		-Wl,--whole-archive ${libname}.a -Wl,--no-whole-archive \
-		"$@" -o ${soname} || die "Creating ${soname} failed"
-	dolib.so ${soname}
-	ln -s ${soname} ${soname%.*}
-	dosym ${soname} /usr/$(get_libdir)/${soname%.*}
-	popd > /dev/null || die
-	use static-libs && dolib.a "${S}_static"/lib/${libname}.a
-}
-
-# create and install a pkgconfig file
-# atlas_install_pc <libname> <pkg name> [extra link flags]
-atlas_install_pc() {
-	local libname=${1} ; shift
-	local pcname=${1} ; shift
-	cat <<-EOF > ${pcname}.pc
-		prefix=${EPREFIX}/usr
-		libdir=\${prefix}/$(get_libdir)
-		includedir=\${prefix}/include
-		Name: ${pcname}
-		Description: ${PN} ${pcname}
-		Version: ${PV}
-		URL: ${HOMEPAGE}
-		Libs: -L\${libdir} -l${libname} $@
-		Libs.private: -L\${libdir} -latlas -lm ${PTLIBS}
-		Cflags: -I\${includedir}/${PN}
-		${PCREQ}
-	EOF
-	insinto /usr/$(get_libdir)/pkgconfig
-	doins ${pcname}.pc
-}
-
-src_install() {
-	cd "${S}_shared/lib" || die
-	# rename to avoid collision with other packages
-	local l
-	for l in {,c}{blas,lapack}; do
-		if [[ -e lib${l}.a ]]; then
-			mv lib{,atl}${l}.a || die
-			if use static-libs; then
-				mv "${S}"_static/lib/lib{,atl}${l}.a || die
-			fi
-		fi
-	done
-
-	[[ -e libptcblas.a ]] && PTLIBS="-lpthread"
-
-	# atlas
-	atlas_install_libs libatlas.a -lm ${PTLIBS}
-
-	# cblas
-	atlas_install_libs libatlcblas.a -lm -L. -latlas
-	atlas_install_pc atlcblas atlas-cblas
-	alternatives_for cblas atlas 0 \
-		/usr/$(get_libdir)/pkgconfig/cblas.pc atlas-cblas.pc \
-		/usr/include/cblas.h atlas/cblas.h
-
-	# cblas threaded
-	if [[ -e libptcblas.a ]]; then
-		atlas_install_libs libptcblas.a -lm -L. -latlas ${PTLIBS}
-		atlas_install_pc ptcblas atlas-cblas-threads
-		alternatives_for cblas atlas-threads 0 \
-			/usr/$(get_libdir)/pkgconfig/cblas.pc atlas-cblas-threads.pc \
-			/usr/include/cblas.h atlas/cblas.h
-	fi
-
-	if use lapack; then
-		PCREQ="Requires: cblas"
-		# clapack
-		atlas_install_libs libatlclapack.a -lm -L. -latlas -latlcblas
-		atlas_install_pc atlclapack atlas-clapack
-
-		# clapack threaded
-		if [[ -e libptclapack.a ]]; then
-			atlas_install_libs libptclapack.a -lm -L. -latlas -lptcblas ${PTLIBS}
-			atlas_install_pc ptclapack atlas-clapack-threads
-		fi
-	fi
-
-	if use fortran; then
-		LINK=$(tc-getF77) PCREQ=
-
-		# blas
-		atlas_install_libs libf77blas.a -lm -L. -latlas
-		atlas_install_pc f77blas atlas-blas
-		alternatives_for blas atlas 0 \
-			/usr/$(get_libdir)/pkgconfig/blas.pc atlas-blas.pc
-
-		# blas threaded
-		if [[ -e libptf77blas.a ]]; then
-			atlas_install_libs libptf77blas.a -lm -L. -latlas ${PTLIBS}
-			atlas_install_pc ptf77blas atlas-blas-threads
-			alternatives_for blas atlas-threads 0 \
-				/usr/$(get_libdir)/pkgconfig/blas.pc atlas-blas-threads.pc
-		fi
-
-		if use lapack; then
-			PCREQ="Requires: blas cblas"
-			# lapack
-			atlas_install_libs libatllapack.a \
-				-lm -L. -latlas -latlcblas -lf77blas
-			atlas_install_pc atllapack atlas-lapack
-			alternatives_for lapack atlas 0 \
-				/usr/$(get_libdir)/pkgconfig/lapack.pc atlas-lapack.pc
-			# lapack threaded
-			if [[ -e libptlapack.a ]]; then
-				atlas_install_libs libptlapack.a \
-					-lm -L. -latlas -lptcblas -lptf77blas ${PTLIBS}
-				atlas_install_pc ptlapack atlas-lapack-threads
-				alternatives_for lapack atlas-threads 0 \
-					/usr/$(get_libdir)/pkgconfig/lapack.pc atlas-lapack-threads.pc
-			fi
-		fi
-	fi
-
-	cd "${S}" || die
-	insinto /usr/include/${PN}
-	doins include/*.h
-
-	cd "${S}/doc" || die
-	dodoc INDEX.txt AtlasCredits.txt ChangeLog
-	use doc && dodoc atlas*pdf cblas.pdf cblasqref.pdf
-	use doc && use fortran && dodoc f77blas*pdf
-	use doc && use fortran && use lapack && dodoc *lapack*pdf
-}
diff --git a/sci-libs/atlas/atlas-3.11.38-r1.ebuild b/sci-libs/atlas/atlas-3.11.38-r1.ebuild
deleted file mode 100644
index 5db98d96b..000000000
--- a/sci-libs/atlas/atlas-3.11.38-r1.ebuild
+++ /dev/null
@@ -1,281 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-FORTRAN_NEEDED=fortran
-
-inherit alternatives-2 eutils fortran-2 linux-info multilib numeric toolchain-funcs versionator
-
-LAPACKP=lapack-3.6.0.tgz
-
-DESCRIPTION="Automatically Tuned Linear Algebra Software"
-HOMEPAGE="http://math-atlas.sourceforge.net/"
-SRC_URI="mirror://sourceforge/math-atlas/${PN}${PV}.tar.bz2
-	fortran? ( lapack? ( http://www.netlib.org/lapack/${LAPACKP} ) )"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="+deprecated doc +fortran generic ifko +lapack static-libs threads"
-
-REQUIRED_USE="
-	deprecated? ( lapack )
-	lapack? ( fortran )"
-
-S="${WORKDIR}/ATLAS"
-
-pkg_setup() {
-	local _cpufreq
-	for _cpufreq in /sys/devices/system/cpu/cpu*/cpufreq/scaling_governor; do
-		if [ -f ${_cpufreq} ]; then
-			if ! grep -q performance ${_cpufreq}; then
-				echo 2> /dev/null performance > ${_cpufreq} || \
-					die "${PN} needs all cpu set to performance"
-			fi
-		fi
-	done
-	[[ -e /sys/devices/system/cpu/intel_pstate ]] \
-		&& die "Intel P-State driver detected. Please reboot with 'intel_pstate=disable' in your cmdline"
-	use fortran && fortran-2_pkg_setup
-	CONFIG_CHECK="
-		!~X86_P4_CLOCKMOD
-		!~X86_INTEL_PSTATE
-	"
-	ERROR_KERNEL_X86_P4_CLOCKMOD="P4 Clockmod frequency scaling influences tuning and needs to be disabled at compile time."
-	ERROR_KERNEL_X86_INTEL_PSTATE="Intel Pstate frequency scaling influences tuning and needs to be disabled at compile time."
-	linux-info_pkg_setup
-}
-
-src_configure() {
-	# hack needed to trick the flaky gcc detection
-	local mycc="$(type -P $(tc-getCC))"
-	[[ ${mycc} == *gcc* ]] && mycc=gcc
-	atlas_configure() {
-		local myconf=(
-			--prefix="${ED}/usr"
-			--libdir="${ED}/usr/$(get_libdir)"
-			--incdir="${ED}/usr/include"
-			--cc="$(tc-getCC)"
-			"-D c -DWALL"
-			"-C acg '${mycc}'"
-			"-F acg '${CFLAGS}'"
-			"-Ss pmake '\$(MAKE) ${MAKEOPTS}'"
-		)
-
-		# OpenMP shown to decreased performance over POSIX threads
-		# (at least in 3.9.x, see atlas-dev mailing list)
-		if use threads; then
-			if use generic; then # 2 threads is most generic
-				myconf+=( "-t 2" "-Si omp 0" )
-			else
-				myconf+=( "-t -1" "-Si omp 0" )
-			fi
-		else
-			myconf+=( "-t  0" "-Si omp 0" )
-		fi
-
-		if use amd64 || use ppc64 || use sparc; then
-			if [ ${ABI} = amd64 ] || [ ${ABI} = ppc64 ] || [ ${ABI} = sparc64 ] ; then
-				myconf+=( "-b 64" )
-			elif [ ${ABI} = x86 ] || [ ${ABI} = ppc ] || [ ${ABI} = sparc32 ] ; then
-				myconf+=( "-b 32" )
-			elif [ ${ABI} = x32 ] ; then
-				myconf+=( "-b 48" )
-			else
-				myconf+=( "-b 64" )
-			fi
-		elif use ppc || use x86; then
-			myconf+=( "-b 32" )
-		elif use ia64; then
-			myconf+=( "-b 64" )
-		fi
-		if use fortran; then
-			myconf+=(
-				"-C if '$(type -P $(tc-getFC))'"
-				"-F if '${FFLAGS}'"
-			)
-			if use lapack; then
-				myconf+=(
-					"-Si latune 1"
-					"--with-netlib-lapack-tarfile=${DISTDIR}/${LAPACKP}"
-				)
-			else
-				myconf+=( "-Si latune 0" )
-			fi
-		else
-			myconf+=( "-Si latune 0" "--nof77" )
-		fi
-		# generic stuff found by make make xprint_enums in atlas build dir
-		# basically assuming sse2+sse1 and 2 threads max
-		use generic && use x86   && myconf+=( "-V 384 -A 13")
-		use generic && use amd64 && myconf+=( "-V 384 -A 24")
-
-		local confdir="${S}_${1}"; shift
-		myconf+=( $(usex ifko "--use-ifko" "") )
-		myconf+=( $@ )
-		mkdir "${confdir}" && cd "${confdir}" || die
-		# for debugging
-		echo ${myconf[@]} > myconf.out
-		"${S}"/configure ${myconf[@]} || die "configure in ${confdir} failed"
-
-		if use deprecated; then
-			echo "BUILD_DEPRECATED=1" >> src/lapack/reference/make.inc.example || die
-		fi
-	}
-
-	atlas_configure shared "-Fa alg -fPIC" ${EXTRA_ECONF}
-	use static-libs && atlas_configure static ${EXTRA_ECONF}
-}
-
-src_compile() {
-	atlas_compile() {
-		pushd "${S}_${1}" > /dev/null || die
-		# atlas does its own parallel builds
-		emake -j1 build
-		cd lib || die
-		emake libclapack.a
-		[[ -e libptcblas.a ]] && emake libptclapack.a
-		popd > /dev/null || die
-	}
-
-	atlas_compile shared
-	use static-libs && atlas_compile static
-}
-
-src_test() {
-	cd "${S}_shared" || die
-	emake -j1 check time
-}
-
-# transform a static archive into a shared library and install them
-# atlas_install_libs <mylib.a> [extra link flags]
-atlas_install_libs() {
-	local libname=$(basename ${1%.*})
-	einfo "Installing ${libname}"
-	local soname=${libname}.so.$(get_major_version)
-	local _cmd
-	shift
-	pushd "${S}_shared"/lib > /dev/null
-	_cmd="${LINK:-$(tc-getCC)}"
-	_cmd+=" ${LDFLAGS} -shared -Wl,--no-undefined -Wl,-soname=${soname}"
-	_cmd+=" -Wl,--whole-archive ${libname}.a -Wl,--no-whole-archive"
-	_cmd+=" $@ -o ${soname}"
-	einfo "${_cmd}"
-	${_cmd} || die "Creating ${soname} failed"
-	dolib.so ${soname}
-	dosym ${soname} /usr/$(get_libdir)/${soname%.*}
-	popd > /dev/null || die
-	use static-libs && dolib.a "${S}_static"/lib/${libname}.a
-}
-
-# create and install a pkgconfig file
-# atlas_install_pc <libname> <pkg name> [extra link flags]
-atlas_install_pc() {
-	local libname=${1} ; shift
-	local pcname=${1} ; shift
-	local extra=()
-	[[ ${PCREQ} ]] && extra+=( --requires "${PCREQ}" )
-	create_pkgconfig \
-		--name "${pcname}" \
-		--description "${PN} ${pcname}" \
-		--libs "-L\${libdir} -l${libname} $@" \
-		--libs-private "-L\${libdir} -latlas -lm ${PTLIBS}" \
-		--cflags "-I\${includedir}/${PN}" \
-		"${extra[@]}" \
-		${pcname}
-}
-
-src_install() {
-	cd "${S}_shared/lib" || die
-	# rename to avoid collision with other packages
-	local l
-	for l in {,c}{blas,lapack}; do
-		if [[ -e lib${l}.a ]]; then
-			mv lib{,atl}${l}.a || die
-			if use static-libs; then
-				mv "${S}"_static/lib/lib{,atl}${l}.a || die
-			fi
-		fi
-	done
-
-	[[ -e libptcblas.a ]] && PTLIBS="-lpthread"
-
-	# atlas
-	atlas_install_libs libatlas.a -lm ${PTLIBS}
-
-	# cblas
-	atlas_install_libs libatlcblas.a -L. -latlas -lm
-	atlas_install_pc atlcblas atlas-cblas
-	alternatives_for cblas atlas 0 \
-		/usr/$(get_libdir)/pkgconfig/cblas.pc atlas-cblas.pc \
-		/usr/include/cblas.h atlas/cblas.h
-
-	# cblas threaded
-	if [[ -e libptcblas.a ]]; then
-		atlas_install_libs libptcblas.a -L. -latlas -lm ${PTLIBS}
-		atlas_install_pc ptcblas atlas-cblas-threads
-		alternatives_for cblas atlas-threads 0 \
-			/usr/$(get_libdir)/pkgconfig/cblas.pc atlas-cblas-threads.pc \
-			/usr/include/cblas.h atlas/cblas.h
-	fi
-
-	if use lapack; then
-		PCREQ="cblas"
-		# clapack
-		atlas_install_libs libatlclapack.a -L. -latlcblas -latlas -lm
-		atlas_install_pc atlclapack atlas-clapack
-
-		# clapack threaded
-		if [[ -e libptclapack.a ]]; then
-			atlas_install_libs libptclapack.a -L. -lptcblas -latlas -lm ${PTLIBS}
-			atlas_install_pc ptclapack atlas-clapack-threads
-		fi
-	fi
-
-	if use fortran; then
-		LINK=$(tc-getF77) PCREQ=
-
-		# blas
-		atlas_install_libs libf77blas.a -L. -latlas -lm
-		atlas_install_pc f77blas atlas-blas
-		alternatives_for blas atlas 0 \
-			/usr/$(get_libdir)/pkgconfig/blas.pc atlas-blas.pc
-
-		# blas threaded
-		if [[ -e libptf77blas.a ]]; then
-			atlas_install_libs libptf77blas.a -L. -latlas -lm ${PTLIBS}
-			atlas_install_pc ptf77blas atlas-blas-threads
-			alternatives_for blas atlas-threads 0 \
-				/usr/$(get_libdir)/pkgconfig/blas.pc atlas-blas-threads.pc
-		fi
-
-		if use lapack; then
-			PCREQ="blas cblas"
-			# lapack
-			atlas_install_libs libatllapack.a \
-				-L. -latlcblas -lf77blas -latlas -lm
-			atlas_install_pc atllapack atlas-lapack
-			alternatives_for lapack atlas 0 \
-				/usr/$(get_libdir)/pkgconfig/lapack.pc atlas-lapack.pc
-			# lapack threaded
-			if [[ -e libptlapack.a ]]; then
-				atlas_install_libs libptlapack.a \
-					-L. -lptcblas -lptf77blas -latlas -lm ${PTLIBS}
-				atlas_install_pc ptlapack atlas-lapack-threads
-				alternatives_for lapack atlas-threads 0 \
-					/usr/$(get_libdir)/pkgconfig/lapack.pc atlas-lapack-threads.pc
-			fi
-		fi
-	fi
-
-	cd "${S}" || die
-	insinto /usr/include/${PN}
-	doins include/*.h
-
-	cd "${S}/doc" || die
-	dodoc INDEX.txt AtlasCredits.txt ChangeLog
-	use doc && dodoc atlas*pdf cblas.pdf cblasqref.pdf
-	use doc && use fortran && dodoc f77blas*pdf
-	use doc && use fortran && use lapack && dodoc *lapack*pdf
-}
diff --git a/sci-libs/atlas/atlas-3.11.39.ebuild b/sci-libs/atlas/atlas-3.11.39.ebuild
deleted file mode 100644
index f4b65140c..000000000
--- a/sci-libs/atlas/atlas-3.11.39.ebuild
+++ /dev/null
@@ -1,285 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-FORTRAN_NEEDED=fortran
-
-inherit alternatives-2 eutils fortran-2 linux-info multilib numeric toolchain-funcs versionator
-
-LAPACKP=lapack-3.7.0.tgz
-
-DESCRIPTION="Automatically Tuned Linear Algebra Software"
-HOMEPAGE="http://math-atlas.sourceforge.net/"
-SRC_URI="mirror://sourceforge/math-atlas/${PN}${PV}.tar.bz2
-	fortran? ( lapack? ( http://www.netlib.org/lapack/${LAPACKP} ) )"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="+deprecated doc +fortran generic ifko +lapack static-libs threads"
-
-REQUIRED_USE="
-	deprecated? ( lapack )
-	lapack? ( fortran )"
-
-S="${WORKDIR}/ATLAS"
-
-PATCHES=(
-	"${FILESDIR}"/${P}-dolastcomp.patch
-)
-
-pkg_setup() {
-	local _cpufreq
-	for _cpufreq in /sys/devices/system/cpu/cpu*/cpufreq/scaling_governor; do
-		if [ -f ${_cpufreq} ]; then
-			if ! grep -q performance ${_cpufreq}; then
-				echo 2> /dev/null performance > ${_cpufreq} || \
-					die "${PN} needs all cpu set to performance"
-			fi
-		fi
-	done
-	[[ -e /sys/devices/system/cpu/intel_pstate ]] \
-		&& die "Intel P-State driver detected. Please reboot with 'intel_pstate=disable' in your cmdline"
-	use fortran && fortran-2_pkg_setup
-	CONFIG_CHECK="
-		!~X86_P4_CLOCKMOD
-		!~X86_INTEL_PSTATE
-	"
-	ERROR_KERNEL_X86_P4_CLOCKMOD="P4 Clockmod frequency scaling influences tuning and needs to be disabled at compile time."
-	ERROR_KERNEL_X86_INTEL_PSTATE="Intel Pstate frequency scaling influences tuning and needs to be disabled at compile time."
-	linux-info_pkg_setup
-}
-
-src_configure() {
-	# hack needed to trick the flaky gcc detection
-	local mycc="$(type -P $(tc-getCC))"
-	[[ ${mycc} == *gcc* ]] && mycc=gcc
-	atlas_configure() {
-		local myconf=(
-			--prefix="${ED}/usr"
-			--libdir="${ED}/usr/$(get_libdir)"
-			--incdir="${ED}/usr/include"
-			--cc="$(tc-getCC)"
-			"-D c -DWALL"
-			"-C acg '${mycc}'"
-			"-F acg '${CFLAGS}'"
-			"-Ss pmake '\$(MAKE) ${MAKEOPTS}'"
-		)
-
-		# OpenMP shown to decreased performance over POSIX threads
-		# (at least in 3.9.x, see atlas-dev mailing list)
-		if use threads; then
-			if use generic; then # 2 threads is most generic
-				myconf+=( "-t 2" "-Si omp 0" )
-			else
-				myconf+=( "-t -1" "-Si omp 0" )
-			fi
-		else
-			myconf+=( "-t  0" "-Si omp 0" )
-		fi
-
-		if use amd64 || use ppc64 || use sparc; then
-			if [ ${ABI} = amd64 ] || [ ${ABI} = ppc64 ] || [ ${ABI} = sparc64 ] ; then
-				myconf+=( "-b 64" )
-			elif [ ${ABI} = x86 ] || [ ${ABI} = ppc ] || [ ${ABI} = sparc32 ] ; then
-				myconf+=( "-b 32" )
-			elif [ ${ABI} = x32 ] ; then
-				myconf+=( "-b 48" )
-			else
-				myconf+=( "-b 64" )
-			fi
-		elif use ppc || use x86; then
-			myconf+=( "-b 32" )
-		elif use ia64; then
-			myconf+=( "-b 64" )
-		fi
-		if use fortran; then
-			myconf+=(
-				"-C if '$(type -P $(tc-getFC))'"
-				"-F if '${FFLAGS}'"
-			)
-			if use lapack; then
-				myconf+=(
-					"-Si latune 1"
-					"--with-netlib-lapack-tarfile=${DISTDIR}/${LAPACKP}"
-				)
-			else
-				myconf+=( "-Si latune 0" )
-			fi
-		else
-			myconf+=( "-Si latune 0" "--nof77" )
-		fi
-		# generic stuff found by make make xprint_enums in atlas build dir
-		# basically assuming sse2+sse1 and 2 threads max
-		use generic && use x86   && myconf+=( "-V 384 -A 13")
-		use generic && use amd64 && myconf+=( "-V 384 -A 24")
-
-		local confdir="${S}_${1}"; shift
-		myconf+=( $(usex ifko "--use-ifko" "") )
-		myconf+=( $@ )
-		mkdir "${confdir}" && cd "${confdir}" || die
-		# for debugging
-		echo ${myconf[@]} > myconf.out
-		"${S}"/configure ${myconf[@]} || die "configure in ${confdir} failed"
-
-		if use deprecated; then
-			echo "BUILD_DEPRECATED=1" >> src/lapack/reference/make.inc.example || die
-		fi
-	}
-
-	atlas_configure shared "-Fa alg -fPIC" ${EXTRA_ECONF}
-	use static-libs && atlas_configure static ${EXTRA_ECONF}
-}
-
-src_compile() {
-	atlas_compile() {
-		pushd "${S}_${1}" > /dev/null || die
-		# atlas does its own parallel builds
-		emake -j1 build
-		cd lib || die
-		emake libclapack.a
-		[[ -e libptcblas.a ]] && emake libptclapack.a
-		popd > /dev/null || die
-	}
-
-	atlas_compile shared
-	use static-libs && atlas_compile static
-}
-
-src_test() {
-	cd "${S}_shared" || die
-	emake -j1 check time
-}
-
-# transform a static archive into a shared library and install them
-# atlas_install_libs <mylib.a> [extra link flags]
-atlas_install_libs() {
-	local libname=$(basename ${1%.*})
-	einfo "Installing ${libname}"
-	local soname=${libname}.so.$(get_major_version)
-	local _cmd
-	shift
-	pushd "${S}_shared"/lib > /dev/null
-	_cmd="${LINK:-$(tc-getCC)}"
-	_cmd+=" ${LDFLAGS} -shared -Wl,--no-undefined -Wl,-soname=${soname}"
-	_cmd+=" -Wl,--whole-archive ${libname}.a -Wl,--no-whole-archive"
-	_cmd+=" $@ -o ${soname}"
-	einfo "${_cmd}"
-	${_cmd} || die "Creating ${soname} failed"
-	dolib.so ${soname}
-	dosym ${soname} /usr/$(get_libdir)/${soname%.*}
-	popd > /dev/null || die
-	use static-libs && dolib.a "${S}_static"/lib/${libname}.a
-}
-
-# create and install a pkgconfig file
-# atlas_install_pc <libname> <pkg name> [extra link flags]
-atlas_install_pc() {
-	local libname=${1} ; shift
-	local pcname=${1} ; shift
-	local extra=()
-	[[ ${PCREQ} ]] && extra+=( --requires "${PCREQ}" )
-	create_pkgconfig \
-		--name "${pcname}" \
-		--description "${PN} ${pcname}" \
-		--libs "-L\${libdir} -l${libname} $@" \
-		--libs-private "-L\${libdir} -latlas -lm ${PTLIBS}" \
-		--cflags "-I\${includedir}/${PN}" \
-		"${extra[@]}" \
-		${pcname}
-}
-
-src_install() {
-	cd "${S}_shared/lib" || die
-	# rename to avoid collision with other packages
-	local l
-	for l in {,c}{blas,lapack}; do
-		if [[ -e lib${l}.a ]]; then
-			mv lib{,atl}${l}.a || die
-			if use static-libs; then
-				mv "${S}"_static/lib/lib{,atl}${l}.a || die
-			fi
-		fi
-	done
-
-	[[ -e libptcblas.a ]] && PTLIBS="-lpthread"
-
-	# atlas
-	atlas_install_libs libatlas.a -lm ${PTLIBS}
-
-	# cblas
-	atlas_install_libs libatlcblas.a -L. -latlas -lm
-	atlas_install_pc atlcblas atlas-cblas
-	alternatives_for cblas atlas 0 \
-		/usr/$(get_libdir)/pkgconfig/cblas.pc atlas-cblas.pc \
-		/usr/include/cblas.h atlas/cblas.h
-
-	# cblas threaded
-	if [[ -e libptcblas.a ]]; then
-		atlas_install_libs libptcblas.a -L. -latlas -lm ${PTLIBS}
-		atlas_install_pc ptcblas atlas-cblas-threads
-		alternatives_for cblas atlas-threads 0 \
-			/usr/$(get_libdir)/pkgconfig/cblas.pc atlas-cblas-threads.pc \
-			/usr/include/cblas.h atlas/cblas.h
-	fi
-
-	if use lapack; then
-		PCREQ="cblas"
-		# clapack
-		atlas_install_libs libatlclapack.a -L. -latlcblas -latlas -lm
-		atlas_install_pc atlclapack atlas-clapack
-
-		# clapack threaded
-		if [[ -e libptclapack.a ]]; then
-			atlas_install_libs libptclapack.a -L. -lptcblas -latlas -lm ${PTLIBS}
-			atlas_install_pc ptclapack atlas-clapack-threads
-		fi
-	fi
-
-	if use fortran; then
-		LINK=$(tc-getF77) PCREQ=
-
-		# blas
-		atlas_install_libs libf77blas.a -L. -latlas -lm
-		atlas_install_pc f77blas atlas-blas
-		alternatives_for blas atlas 0 \
-			/usr/$(get_libdir)/pkgconfig/blas.pc atlas-blas.pc
-
-		# blas threaded
-		if [[ -e libptf77blas.a ]]; then
-			atlas_install_libs libptf77blas.a -L. -latlas -lm ${PTLIBS}
-			atlas_install_pc ptf77blas atlas-blas-threads
-			alternatives_for blas atlas-threads 0 \
-				/usr/$(get_libdir)/pkgconfig/blas.pc atlas-blas-threads.pc
-		fi
-
-		if use lapack; then
-			PCREQ="blas cblas"
-			# lapack
-			atlas_install_libs libatllapack.a \
-				-L. -latlcblas -lf77blas -latlas -lm
-			atlas_install_pc atllapack atlas-lapack
-			alternatives_for lapack atlas 0 \
-				/usr/$(get_libdir)/pkgconfig/lapack.pc atlas-lapack.pc
-			# lapack threaded
-			if [[ -e libptlapack.a ]]; then
-				atlas_install_libs libptlapack.a \
-					-L. -lptcblas -lptf77blas -latlas -lm ${PTLIBS}
-				atlas_install_pc ptlapack atlas-lapack-threads
-				alternatives_for lapack atlas-threads 0 \
-					/usr/$(get_libdir)/pkgconfig/lapack.pc atlas-lapack-threads.pc
-			fi
-		fi
-	fi
-
-	cd "${S}" || die
-	insinto /usr/include/${PN}
-	doins include/*.h
-
-	cd "${S}/doc" || die
-	dodoc INDEX.txt AtlasCredits.txt ChangeLog
-	use doc && dodoc atlas*pdf cblas.pdf cblasqref.pdf
-	use doc && use fortran && dodoc f77blas*pdf
-	use doc && use fortran && use lapack && dodoc *lapack*pdf
-}
diff --git a/sci-libs/atlas/files/atlas-3.10.0-x32-support.patch b/sci-libs/atlas/files/atlas-3.10.0-x32-support.patch
deleted file mode 100644
index 82e698069..000000000
--- a/sci-libs/atlas/files/atlas-3.10.0-x32-support.patch
+++ /dev/null
@@ -1,93 +0,0 @@
---- ATLAS/CONFIG/src/SpewMakeInc.c.orig	2012-05-24 00:56:27.000000000 +0200
-+++ ATLAS/CONFIG/src/SpewMakeInc.c	2012-06-06 15:17:40.000000000 +0200
-@@ -370,7 +370,7 @@
-    }
-    *f2cdefs = fdefs;
-    *ecdefs = cdefs;
--   if (*ptrbits != 32 && *ptrbits != 64)
-+   if (*ptrbits != 32 && *ptrbits != 64 && *ptrbits != 48)
-       *ptrbits = 0;
- }
- char *GetPtrbitsFlag(enum OSTYPE OS, enum MACHTYPE arch, int ptrbits,
-@@ -418,6 +418,8 @@
-          sp = "-m64";
-        else if (ptrbits == 32)
-          sp = "-m32";
-+       else if (ptrbits == 48 && MachIsX86(arch))
-+         sp = "-mx32";
-    }
-    return(sp);
- }
---- ATLAS/CONFIG/src/gnuccw.c.orig	2012-06-06 15:30:05.000000000 +0200
-+++ ATLAS/CONFIG/src/gnuccw.c	2012-06-06 15:33:29.000000000 +0200
-@@ -363,7 +363,7 @@
-  *          -m64/32 args get passed to comp, asm & linker
-  */
-             else if (at->len == 4 &&
--                     (!strcmp(at->arg, "-m64") || !strcmp(at->arg, "-m32")))
-+                     (!strcmp(at->arg, "-m64") || !strcmp(at->arg, "-m32") || !strcmp(at->arg, "-mx32")))
-             {
-                if (at->arg[2] == '6')
-                   *BITS = 64;
---- ATLAS/CONFIG/src/gcc3p.c.orig	2012-06-06 15:29:38.000000000 +0200
-+++ ATLAS/CONFIG/src/gcc3p.c	2012-06-06 15:31:17.000000000 +0200
-@@ -352,7 +352,7 @@
-  *          -m64/32 args get passed to comp, asm & linker
-  */
-             else if (at->len == 4 &&
--                     (!strcmp(at->arg, "-m64") || !strcmp(at->arg, "-m32")))
-+                     (!strcmp(at->arg, "-m64") || !strcmp(at->arg, "-m32") || !strcmp(at->arg, "-mx32")))
-             {
-                if (at->arg[2] == '6')
-                {
---- ATLAS/CONFIG/src/gnuf90w.c.orig	2012-06-06 15:29:28.000000000 +0200
-+++ ATLAS/CONFIG/src/gnuf90w.c	2012-06-06 15:30:36.000000000 +0200
-@@ -363,7 +363,7 @@
-  *          -m64/32 args get passed to comp, asm & linker
-  */
-             else if (at->len == 4 &&
--                     (!strcmp(at->arg, "-m64") || !strcmp(at->arg, "-m32")))
-+                     (!strcmp(at->arg, "-m64") || !strcmp(at->arg, "-m32") || !strcmp(at->arg, "-mx32")))
-             {
-                if (at->arg[2] == '6')
-                   *BITS = 64;
---- ATLAS/CONFIG/src/probe_comp.c.orig	2012-06-06 15:29:51.000000000 +0200
-+++ ATLAS/CONFIG/src/probe_comp.c	2012-06-06 15:32:50.000000000 +0200
-@@ -614,6 +614,8 @@
-          sp = "-m64";
-        else if (ptrbits == 32)
-          sp = "-m32";
-+       else if (ptrbits == 48)
-+         sp = "-mx32";
-    }
-    return(sp);
- }
-@@ -1691,7 +1693,7 @@
-          }
-       }
-    }
--   if (*ptrbits != 32 && *ptrbits != 64)
-+   if (*ptrbits != 32 && *ptrbits != 64 && *ptrbits != 48)
-       *ptrbits = 0;
- }
- 
---- ATLAS/CONFIG/src/config.c.orig	2012-06-06 15:59:53.000000000 +0200
-+++ ATLAS/CONFIG/src/config.c	2012-06-06 16:00:07.000000000 +0200
-@@ -183,7 +183,7 @@
-    i = sprintf(ln, "make IRun_comp args=\"-v %d -o atlconf.txt -O %d -A %d -Si nof77 %d -V %d %s %s",
-                verb, OS, arch, nof77, vecext, targarg, flags);
-    free(flags);
--   if (ptrbits == 64 || ptrbits == 32)
-+   if (ptrbits == 64 || ptrbits == 32 || ptrbits == 48)
-    {
-       sprintf(stmp, "-b %d", ptrbits);
-       ln = NewAppendedString(ln, stmp);
-@@ -1272,7 +1272,7 @@
-    }
-    *f2cdefs = fdefs;
-    *ecdefs = cdefs;
--   if (*ptrbits != 32 && *ptrbits != 64)
-+   if (*ptrbits != 32 && *ptrbits != 64 && *ptrbits != 48)
-       *ptrbits = 0;
- }
- 
diff --git a/sci-libs/atlas/files/atlas-3.11.39-dolastcomp.patch b/sci-libs/atlas/files/atlas-3.11.39-dolastcomp.patch
deleted file mode 100644
index 3cd554cf4..000000000
--- a/sci-libs/atlas/files/atlas-3.11.39-dolastcomp.patch
+++ /dev/null
@@ -1,13 +0,0 @@
-diff --git a/src/threads/blas/level3/ATL_tammm_G.c b/src/threads/blas/level3/ATL_tammm_G.c
-index a43a08b..77c78f4 100644
---- a/src/threads/blas/level3/ATL_tammm_G.c
-+++ b/src/threads/blas/level3/ATL_tammm_G.c
-@@ -479,7 +479,7 @@ static void DoCompNoCopy(ATL_tamm_gOOO_t *pd, ATL_UINT rank, TYPE *wC)
- #ifndef TCPLX
-    #undef rC
- #endif
--void DoLastComp(ATL_tamm_gOOO_t *pd, ATL_UINT rank, TYPE *wC)
-+static void DoLastComp(ATL_tamm_gOOO_t *pd, ATL_UINT rank, TYPE *wC)
- {
-    ipinfo_t *ip=pd->ip;
-    TYPE *wA=pd->wA, *wB=pd->wB, *C=pd->C;
diff --git a/sci-libs/atlas/files/format-security.patch b/sci-libs/atlas/files/format-security.patch
deleted file mode 100644
index f3f45d774..000000000
--- a/sci-libs/atlas/files/format-security.patch
+++ /dev/null
@@ -1,198 +0,0 @@
- bin/atlas_install.c | 46 +++++++++++++++++++++++-----------------------
- 1 file changed, 23 insertions(+), 23 deletions(-)
-
-diff --git a/bin/atlas_install.c b/bin/atlas_install.c
-index 2753cbf..21b716d 100644
---- a/bin/atlas_install.c
-+++ b/bin/atlas_install.c
-@@ -483,9 +483,9 @@ void PrintStartStop(FILE *fp0, FILE *fp1, int nspc, int START, int sec,
-          fprintf(fp1, "\n\n");
-    }
-    if (fp0)
--      fprintf(fp0, ln);
-+      fprintf(fp0, "%s", ln);
-    if (fp1)
--      fprintf(fp1, ln);
-+      fprintf(fp1, "%s", ln);
- }
- 
- int LnIsCont(char *ln)
-@@ -776,11 +776,11 @@ void GoToTown(int ARCHDEF, int L1DEF, int TuneLA)
-          if (DefInstall)
-          {
-             sprintf(ln, "%s IRunMMDef pre=%c %s %s\n", fmake, pre, redir, ln2);
--            fprintf(stdout, ln);
-+            fprintf(stdout, "%s", ln);
-             ATL_Cassert(system(ln)==0, "BUILDING BLOCK MATMUL TUNE", ln2);
-          }
-          sprintf(ln, "%s %s pre=%c %s %s\n", fmake, fnam, pre, redir, ln2);
--         fprintf(stdout, ln);
-+         fprintf(stdout, "%s", ln);
-          ATL_Cassert(system(ln)==0, "BUILDING BLOCK MATMUL TUNE", ln2);
-          PrintBanner(ln2, 0, 2, ip+1, 1);
-       }
-@@ -836,7 +836,7 @@ void GoToTown(int ARCHDEF, int L1DEF, int TuneLA)
-       if (!FileExists(fnam))
-       {
-          sprintf(ln, "%s %s pre=%c %s %s", fmake, fnam, pre, redir, ln2);
--         fprintf(stdout, ln);
-+         fprintf(stdout, "%s", ln);
-          ATL_Cassert(system(ln)==0, "BUILDING BLOCK MATMUL TUNE", ln2);
-       }
-       fp = fopen(fnam, "r");
-@@ -854,7 +854,7 @@ void GoToTown(int ARCHDEF, int L1DEF, int TuneLA)
-             {
-                sprintf(ln, "%s %s pre=%c nb=%d %s %s",
-                        fmake, fnam, pre, ncnb, redir, ln2);
--               fprintf(stdout, ln);
-+               fprintf(stdout, "%s", ln);
-                ATL_Cassert(system(ln)==0, "BUILDING BLOCK MATMUL TUNE", ln2);
-             }
-             GetInstLogFile(fnam, pre, &muladd, &pf, &lat, &nb, &mu, &nu, &ku,
-@@ -881,7 +881,7 @@ void GoToTown(int ARCHDEF, int L1DEF, int TuneLA)
-       }
- 
-       sprintf(ln, "%s MMinstall pre=%c %s %s\n", fmake, pre, redir, ln2);
--      fprintf(stdout, ln);
-+      fprintf(stdout, "%s", ln);
-       ATL_Cassert(system(ln)==0, "BUILDING BLOCK MATMUL TUNE", ln2);
- 
-       fprintf(fpsum, "\n");
-@@ -896,7 +896,7 @@ void GoToTown(int ARCHDEF, int L1DEF, int TuneLA)
-          PrintBanner(ln2, 1, 2, ip+1, 2);
-          sprintf(ln, "%s INSTALL_LOG/atlas_cacheedge.h pre=%c %s %s\n",
-                  fmake, pre, redir, ln2);
--         fprintf(stdout, ln);
-+         fprintf(stdout, "%s", ln);
-          ATL_Cassert(system(ln)==0, "CACHEEDGE DETECTION", ln2);
-          PrintBanner(ln2, 0, 2, ip+1, 2);
-       }
-@@ -922,7 +922,7 @@ void GoToTown(int ARCHDEF, int L1DEF, int TuneLA)
-          {
-             sprintf(ln, "%s %s pre=%c %s %s\n",
-                     fmake, ln3, pre, redir, ln2);
--            fprintf(stdout, ln);
-+            fprintf(stdout, "%s", ln);
-             ATL_Cassert(system(ln)==0, "CACHEEDGE DETECTION", ln2);
-          }
-          fp = fopen(ln3, "r");
-@@ -955,7 +955,7 @@ void GoToTown(int ARCHDEF, int L1DEF, int TuneLA)
-               "\n\n   STAGE 2-%d-3: COPY/NO-COPY CROSSOVER DETECTION\n", ip+1);
- 
-          sprintf(ln, "%s %s pre=%c %s %s\n", fmake, fnam, pre, redir, ln2);
--         fprintf(stdout, ln);
-+         fprintf(stdout, "%s", ln);
-          ATL_Cassert(system(ln)==0, "COPY/NO-COPY CROSSOVER DETECTION", ln2);
-          PrintBanner(ln2, 0, 2, ip+1, 3);
-          fprintf(stdout, "      done.\n");
-@@ -970,17 +970,17 @@ void GoToTown(int ARCHDEF, int L1DEF, int TuneLA)
-       {
-          sprintf(ln, "%s INSTALL_LOG/atlas_%ctrsmXover.h pre=%c %s %s\n",
-                  fmake, pre, pre, redir, ln2);
--         fprintf(stdout, ln);
-+         fprintf(stdout, "%s", ln);
-          ATL_Cassert(system(ln)==0, "L3BLAS TUNING", ln2);
-       }
-       else
-       {
-          sprintf(ln, "%s Il3lib pre=%c %s %s\n", fmake, pre, redir, ln2);
--         fprintf(stdout, ln);
-+         fprintf(stdout, "%s", ln);
-          ATL_Cassert(system(ln)==0, "L3BLAS TUNING", ln2);
-       }
-       sprintf(ln, "%s %ccblaslib %s %s\n", fmake, pre, redir, ln2); /* cblas */
--      fprintf(stdout, ln);
-+      fprintf(stdout, "%s", ln);
-       ATL_Cassert(system(ln)==0, "L3BLAS TUNING", ln2);
-       PrintBanner(ln2, 0, 2, ip+1, 5);
-       PrintStartStop(stdout, fpsum, 3, 0, 2, ip+1, 4, "L3BLAS TUNE");
-@@ -993,7 +993,7 @@ void GoToTown(int ARCHDEF, int L1DEF, int TuneLA)
-          sprintf(ln2, "INSTALL_LOG/%cMVNTUNE.LOG", pre);
-          PrintBanner(ln2, 1, 2, ip+1, 7);
-          sprintf(ln, "%s %s pre=%c %s %s\n", fmake, fnam, pre, redir, ln2);
--         fprintf(stdout, ln);
-+         fprintf(stdout, "%s", ln);
-          ATL_Cassert(system(ln)==0, "MVNTUNE", ln2);
-          ATL_Cassert(FileIsThere(fnam), "MVNTUNE", ln2);
-          PrintBanner(ln2, 0, 2, ip+1, 7);
-@@ -1026,7 +1026,7 @@ void GoToTown(int ARCHDEF, int L1DEF, int TuneLA)
-          sprintf(ln2, "INSTALL_LOG/%cMVTTUNE.LOG", pre);
-          PrintBanner(ln2, 1, 2, ip+1, 7);
-          sprintf(ln, "%s %s pre=%c %s %s\n", fmake, fnam, pre, redir, ln2);
--         fprintf(stdout, ln);
-+         fprintf(stdout, "%s", ln);
-          ATL_Cassert(system(ln)==0, "MVTTUNE", ln2);
-          ATL_Cassert(FileIsThere(fnam), "MVTTUNE", ln2);
-          PrintBanner(ln2, 0, 2, ip+1, 7);
-@@ -1061,7 +1061,7 @@ void GoToTown(int ARCHDEF, int L1DEF, int TuneLA)
-          sprintf(ln2, "INSTALL_LOG/%cR1TUNE.LOG", pre);
-          PrintBanner(ln2, 1, 2, ip+1, 7);
-          sprintf(ln, "%s %s pre=%c %s %s\n", fmake, fnam, pre, redir, ln2);
--         fprintf(stdout, ln);
-+         fprintf(stdout, "%s", ln);
-          ATL_Cassert(system(ln)==0, "R1TUNE", ln2);
-          ATL_Cassert(FileIsThere(fnam), "R1TUNE", ln2);
-          PrintBanner(ln2, 0, 2, ip+1, 7);
-@@ -1099,7 +1099,7 @@ void GoToTown(int ARCHDEF, int L1DEF, int TuneLA)
-    sprintf(ln2, "INSTALL_LOG/LIBBUILD.LOG");
-    PrintBanner(ln2, 1, 3, 1, 1);
-    sprintf(ln, "%s IBuildLibs %s %s\n", fmake, redir, ln2);
--   fprintf(stdout, ln);
-+   fprintf(stdout, "%s", ln);
-    ATL_Cassert(system(ln)==0, "LIBRARY BUILD", ln2);
-    ATL_Cassert(FileIsThere(fnam), "LIBRARY BUILD", ln2);
-    PrintBanner(ln2, 0, 3, 1, 1);
-@@ -1110,7 +1110,7 @@ void GoToTown(int ARCHDEF, int L1DEF, int TuneLA)
-    PrintBanner(ln2, 1, 4, 1, 1);
-    PrintStartStop(stdout, fpsum, 3, 1, 4, 1, 1, "TRSM TUNE");
-    sprintf(ln, "%s IPostTune %s %s\n", fmake, redir, ln2);
--   fprintf(stdout, ln);
-+   fprintf(stdout, "%s", ln);
-    ATL_Cassert(system(ln)==0, "POST-BUILD TUNE", ln2);
-    PrintStartStop(stdout, fpsum, 3, 0, 4, 1, 0, NULL);
-    ATL_Cassert(FileIsThere(fnam), "POST-BUILD TUNE", ln2);
-@@ -1121,7 +1121,7 @@ void GoToTown(int ARCHDEF, int L1DEF, int TuneLA)
-    sprintf(ln2, "INSTALL_LOG/PTTUNE.LOG");
-    PrintBanner(ln2, 1, 4, 2, 0);
-    sprintf(ln, "%s IPTtune %s %s\n", fmake, redir, ln2);
--   fprintf(stdout, ln);
-+   fprintf(stdout, "%s", ln);
-    ATL_Cassert(system(ln)==0, "THREADING TUNE", ln2);
-    PrintStartStop(stdout, fpsum, 3, 0, 4, 2, 0, "THREADING TUNE");
- 
-@@ -1129,7 +1129,7 @@ void GoToTown(int ARCHDEF, int L1DEF, int TuneLA)
-    sprintf(ln2, "INSTALL_LOG/LIBPTBUILD.LOG");
-    PrintBanner(ln2, 1, 4, 2, 1);
-    sprintf(ln, "%s IBuildPtlibs %s %s\n", fmake, redir, ln2);
--   fprintf(stdout, ln);
-+   fprintf(stdout, "%s", ln);
-    ATL_Cassert(system(ln)==0, "PTLIBRARY BUILD", ln2);
-    PrintBanner(ln2, 0, 4, 2, 1);
-    PrintStartStop(stdout, fpsum, 3, 0, 4, 2, 1, "THREADING BUILD");
-@@ -1144,7 +1144,7 @@ void GoToTown(int ARCHDEF, int L1DEF, int TuneLA)
-          PrintStartStop(stdout, fpsum, 6, 1, 4, 3, ip+1, ln2);
-          sprintf(ln2, "INSTALL_LOG/%cLATUNE.LOG", pre);
-          PrintBanner(ln2, 1, 4, 3, ip+1);
--         fprintf(stdout, ln);
-+         fprintf(stdout, "%s", ln);
-          sprintf(ln, "%s ILATune pre=%c %s %s\n", fmake, pre, redir, ln2);
-          ATL_Cassert(system(ln)==0, "LAPACK TUNE", ln2);
-          PrintStartStop(stdout, fpsum, 6, 0, 4, 3, ip+1, NULL);
-@@ -1162,7 +1162,7 @@ void GoToTown(int ARCHDEF, int L1DEF, int TuneLA)
-    #else
-       sprintf(ln, "%s IBuildLibs %s %s\n", fmake, redir, ln2);
-    #endif
--   fprintf(stdout, ln);
-+   fprintf(stdout, "%s", ln);
-    ATL_Cassert(system(ln)==0, "STATIC LIBRARY UPDATE", ln2);
-    PrintBanner(ln2, 0, 5, 1, 1);
-    PrintStartStop(stdout, fpsum, 3, 0, 5, 1, 0, "FINAL STATIC LIBRARY UPDATE");
-@@ -1172,7 +1172,7 @@ void GoToTown(int ARCHDEF, int L1DEF, int TuneLA)
-    sprintf(ln2, "INSTALL_LOG/LIBDYBUILD.LOG");
-    PrintBanner(ln2, 1, 5, 2, 1);
-    sprintf(ln, "%s IBuildDyLibs %s %s\n", fmake, redir, ln2);
--   fprintf(stdout, ln);
-+   fprintf(stdout, "%s", ln);
-    ATL_Cassert(system(ln)==0, "DYLIBRARY BUILD", ln2);
-    PrintBanner(ln2, 0, 5, 2, 1);
-    PrintStartStop(stdout, fpsum, 3, 0, 5, 2, 0, NULL);
diff --git a/sci-libs/atlas/metadata.xml b/sci-libs/atlas/metadata.xml
deleted file mode 100644
index 616e09a4c..000000000
--- a/sci-libs/atlas/metadata.xml
+++ /dev/null
@@ -1,24 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="project">
-		<email>sci@gentoo.org</email>
-		<name>Gentoo Science Project</name>
-	</maintainer>
-	<longdescription lang="en">
-ATLAS is an approach for the automatic generation and optimization of
-numerical software. Currently ATLAS supplies optimized versions for the
-complete set of linear algebra kernels known as the Basic Linear Algebra
-Subroutines (BLAS) for both c and F77 interfaces. It can also build
-a subset of the linear algebra routine LAPACK library or the full
-LAPACK using the reference LAPACK from Netlib.
-</longdescription>
-	<use>
-		<flag name="deprecated">Build deprecated routines</flag>
-		<flag name="generic">Build atlas assuming a fairly generic architecture (sse2 for x86, core2 for amd64)</flag>
-		<flag name="ifko">Use iFKO to improve ATLAS performance (ATTENTION!!! Increases builtime enormously)</flag>
-	</use>
-	<upstream>
-		<remote-id type="sourceforge">math-atlas</remote-id>
-	</upstream>
-</pkgmetadata>