sci-libs/nipype: revbump 1.1.1-r2

package supports newer prov

Package-Manager: Portage-2.3.98, Repoman-2.3.22
Signed-off-by: Horea Christian <chr@chymera.eu>

1 files changed, 69 insertions, 0 deletions

diff --git a/sci-libs/nipype/nipype-1.1.1-r2.ebuild b/sci-libs/nipype/nipype-1.1.1-r2.ebuild
new file mode 100644
index 000000000..a83371092
--- /dev/null
+++ b/sci-libs/nipype/nipype-1.1.1-r2.ebuild
@@ -0,0 +1,69 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python3_{6,7} )
+PYTHON_REQ_USE="threads(+),sqlite"
+
+inherit distutils-r1
+
+DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces"
+HOMEPAGE="http://nipy.sourceforge.net/nipype/"
+SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="test"
+
+DEPEND="
+	dev-python/future[${PYTHON_USEDEP}]
+	dev-python/numpy[${PYTHON_USEDEP}]
+	dev-python/prov[${PYTHON_USEDEP}]
+	dev-python/setuptools[${PYTHON_USEDEP}]
+	sci-libs/nibabel[${PYTHON_USEDEP}]
+	test? (
+		dev-python/mock[${PYTHON_USEDEP}]
+		<=dev-python/pytest-4.6.9[${PYTHON_USEDEP}]
+		${RDEPEND}
+		)
+"
+# Dependency disabled as upstream test configuration which requires it fails
+#dev-python/pytest-xdist[${PYTHON_USEDEP}]
+
+RDEPEND="
+	>=dev-python/click-6.6[${PYTHON_USEDEP}]
+	dev-python/networkx[${PYTHON_USEDEP}]
+	dev-python/packaging[${PYTHON_USEDEP}]
+	dev-python/pydot[${PYTHON_USEDEP}]
+	dev-python/pydotplus[${PYTHON_USEDEP}]
+	dev-python/pygraphviz[${PYTHON_USEDEP}]
+	dev-python/python-dateutil[${PYTHON_USEDEP}]
+	dev-python/simplejson[${PYTHON_USEDEP}]
+	dev-python/traits[${PYTHON_USEDEP}]
+	sci-libs/scipy[${PYTHON_USEDEP}]
+"
+
+src_prepare() {
+	sed -i\
+		-e "/'pytest>=%s' % PYTEST_MIN_VERSION,/d"\
+		-e "/'pytest-xdist',$/d"\
+		-e "/'prov==%s' % PROV_VERSION,/d"\
+		nipype/info.py || die
+	sed -i\
+		-e "s/prov==1\.5\.0/prov/g"\
+		requirements.txt rtd_requirements.txt || die
+	default
+}
+
+python_test() {
+	pytest -vv\
+		|| die
+	# Upstream test configuration fails
+		#-c nipype/pytest.ini\
+		#--doctest-modules nipype\
+		#--cov nipype\
+		#--cov-config .coveragerc\
+		#--cov-report xml:cov.xml\
+}