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| author |   Martin Mokrejs <mmokrejs@gentoo.org> | 2011-01-04 00:35:44 +0100 |
|---|---|---|
| committer | Martin Mokrejs <mmokrejs@gentoo.org> | 2011-01-04 00:35:44 +0100 |
| commit | bc656b39b821dff80f22d9171e6a5036583baa52 (patch) | |
| tree | db27417a6c1ea51e293597e0830fa3936a6e8ae9 | |
| parent | sci-biology/align_to_scf: new package (diff) | |
| download | sci-bc656b39b821dff80f22d9171e6a5036583baa52.tar.gz sci-bc656b39b821dff80f22d9171e6a5036583baa52.tar.bz2 sci-bc656b39b821dff80f22d9171e6a5036583baa52.zip | |
sci-biology/roche454ace2caf: convert ace files to gap4 (part of staden v1)
| -rw-r--r-- | sci-biology/roche454ace2caf/Manifest | 3 | ||||
| -rw-r--r-- | sci-biology/roche454ace2caf/metadata.xml | 9 | ||||
| -rw-r--r-- | sci-biology/roche454ace2caf/roche454ace2caf-20100812.ebuild | 29 |
3 files changed, 41 insertions, 0 deletions
diff --git a/sci-biology/roche454ace2caf/Manifest b/sci-biology/roche454ace2caf/Manifest new file mode 100644 index 000000000..1b753f056 --- /dev/null +++ b/sci-biology/roche454ace2caf/Manifest @@ -0,0 +1,3 @@ +DIST roche454ace2gap-2010-12-08.tgz 261317 RMD160 e7760661f16ffd69a7d7edcb661cac3a8cf6ad36 SHA1 deff8d9239cb13c9a1d6f54f9fdc2436163cd1fc SHA256 aee60307eb8f9369ed0b17599c946e1b465c71ad122563b216af453e4f30ea93 +EBUILD roche454ace2caf-20100812.ebuild 725 RMD160 d780575783e278d02c0d661e7ade20f7a80e176d SHA1 847e8a7a6b9037275bf82dd79e4578f2c12e2679 SHA256 71f45a49898dd32283bb066ec8974b15c1f483ab4ed61eb0407c4f1de1235457 +MISC metadata.xml 261 RMD160 ce19afc5fdd536a9eadb35a705f09613e3774e32 SHA1 b95b491e808c8dd5a106edae7e48af4f8d61f58a SHA256 e3766426d46af16432093cd9fb8a2df3862c77ef313ad175ca2ef60af5cee6f5 diff --git a/sci-biology/roche454ace2caf/metadata.xml b/sci-biology/roche454ace2caf/metadata.xml new file mode 100644 index 000000000..d58c0ecd5 --- /dev/null +++ b/sci-biology/roche454ace2caf/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>mmokrejs@gentoo.org</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/roche454ace2caf/roche454ace2caf-20100812.ebuild b/sci-biology/roche454ace2caf/roche454ace2caf-20100812.ebuild new file mode 100644 index 000000000..5681437a6 --- /dev/null +++ b/sci-biology/roche454ace2caf/roche454ace2caf-20100812.ebuild @@ -0,0 +1,29 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=3 + +DESCRIPTION="Perl-based tools to manipulate caf, gap, ace files used in genome assembly" +HOMEPAGE="http://genome.imb-jena.de/software/roche454ace2caf" +SRC_URI="http://genome.imb-jena.de/software/roche454ace2caf/download/src/roche454ace2gap-2010-12-08.tgz" + +LICENSE="FLI-Jena" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +DEPEND="dev-lang/perl" +RDEPEND="${DEPEND} + sci-biology/align_to_scf + sci-biology/sff_dump + sci-biology/caftools + sci-biology/staden" + +S="${WORKDIR}"/roche2gap + +src_install(){ + dobin bin/*.pl + #newbin bin/align_to_scf-Linux align_to_scf + #newbin bin/sff_dump-Linux sff_dump +} |