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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2017-04-19 11:16:35 +0200 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2017-04-19 11:16:35 +0200 |
| commit | d32ee40acbcb944ebc89a37b5935e84bbe2bf36b (patch) | |
| tree | 2fcb1c89e26ac5b72d7ad6e9fdae063377423717 | |
| parent | sci-libs/libmaus2: make configure to enable optional but highly wanted features (diff) | |
| download | sci-d32ee40acbcb944ebc89a37b5935e84bbe2bf36b.tar.gz sci-d32ee40acbcb944ebc89a37b5935e84bbe2bf36b.tar.bz2 sci-d32ee40acbcb944ebc89a37b5935e84bbe2bf36b.zip | |
sci-biology/vcftools: add a pre-release version
Our build patch for 0.1.14 was accepted by upstream.
Package-Manager: Portage-2.3.5, Repoman-2.3.2
| -rw-r--r-- | sci-biology/vcftools/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/vcftools/metadata.xml | 11 | ||||
| -rw-r--r-- | sci-biology/vcftools/vcftools-0.1.15_pre.ebuild | 35 |
3 files changed, 47 insertions, 0 deletions
diff --git a/sci-biology/vcftools/Manifest b/sci-biology/vcftools/Manifest new file mode 100644 index 000000000..0f255bb48 --- /dev/null +++ b/sci-biology/vcftools/Manifest @@ -0,0 +1 @@ +DIST vcftools-0.1.15.tar.gz 481398 SHA256 31e47afd5be679d89ece811a227525925b6907cce4af2c86f10f465e080383e3 SHA512 9ef5688202b263139c7e6f3ff0d6f2565f08bc7b5a67dba7b5f6845791b34ae23515e65b2b294502fe8a8343d061612fa9c5f11742323cd70c2f8409609e0366 WHIRLPOOL b98581f54650979989a9e29745e1db35206e14b70e2221a2aacc1ebb76b13ce7b93320cd56f45deb2a43a1bbddf40dc8edc075340ef0fe7f237eec42bb2b9fb9 diff --git a/sci-biology/vcftools/metadata.xml b/sci-biology/vcftools/metadata.xml new file mode 100644 index 000000000..77f6f92e0 --- /dev/null +++ b/sci-biology/vcftools/metadata.xml @@ -0,0 +1,11 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="project"> + <email>sci-biology@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> + <upstream> + <remote-id type="sourceforge">vcftools</remote-id> + </upstream> +</pkgmetadata> diff --git a/sci-biology/vcftools/vcftools-0.1.15_pre.ebuild b/sci-biology/vcftools/vcftools-0.1.15_pre.ebuild new file mode 100644 index 000000000..0610b01a1 --- /dev/null +++ b/sci-biology/vcftools/vcftools-0.1.15_pre.ebuild @@ -0,0 +1,35 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit autotools flag-o-matic perl-functions toolchain-funcs + +MY_PV=${PV/_pre/} +S="${WORKDIR}/${PN}-${MY_PV}" + +DESCRIPTION="Tools for working with VCF (Variant Call Format) files" +HOMEPAGE="http://vcftools.sourceforge.net/" +SRC_URI="https://github.com/${PN}/${PN}/releases/download/v${MY_PV}/${PN}-${MY_PV}.tar.gz" + +LICENSE="LGPL-3" +SLOT="0" +KEYWORDS="~x86 ~amd64" +IUSE="lapack" + +RDEPEND="sys-libs/zlib + dev-lang/perl:= + lapack? ( virtual/lapack )" +DEPEND="${RDEPEND} + virtual/pkgconfig" + +src_configure() { + perl_set_version + + append-flags $($(tc-getPKG_CONFIG) --cflags lapack) + append-libs $($(tc-getPKG_CONFIG) --libs lapack) + + econf \ + $(use_enable lapack pca) \ + --with-pmdir="${VENDOR_LIB#${EPREFIX}/usr}" +} |