diff options
| author |   Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-02-01 11:32:54 +0100 |
|---|---|---|
| committer | Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-02-01 11:32:54 +0100 |
| commit | d71c56239475f71bc640d54a4e70f71335c9d637 (patch) | |
| tree | 0403001c2a9e31eea23fe27df43481e7f46beb3d | |
| parent | sci-biology/biobambam2: add keyword (diff) | |
| download | sci-d71c5623.tar.gz sci-d71c5623.tar.bz2 sci-d71c5623.zip | |
sci-biology/cortex_var: fix sed calls
but still does not compile, needs a patch
Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
| -rw-r--r-- | sci-biology/cortex_var/cortex_var-1.0.5.21.ebuild | 8 |
1 files changed, 5 insertions, 3 deletions
diff --git a/sci-biology/cortex_var/cortex_var-1.0.5.21.ebuild b/sci-biology/cortex_var/cortex_var-1.0.5.21.ebuild index 0e611a6c6..f5b86e25c 100644 --- a/sci-biology/cortex_var/cortex_var-1.0.5.21.ebuild +++ b/sci-biology/cortex_var/cortex_var-1.0.5.21.ebuild @@ -28,13 +28,15 @@ S="${WORKDIR}/CORTEX_release_v${PV}" src_prepare(){ default - sed -e "s/ -O3 / ${CFLAGS} /" Makefile || die - sed -e "s#libs/gsl-1.15#${EPREFIX}/usr/include/gsl#" Makefile || die + sed -i -e "s/ -O3 / ${CFLAGS} /" Makefile || die + sed -i -e "s#libs/gsl-1.15#${EPREFIX}/usr/include/gsl#" Makefile || die } src_compile(){ rm -rf libs/htslib libs/gsl-1.15 || die - emake NUM_COLS=1 MAXK=31 cortex_var || die + emake -C libs/string_buffer + emake STRING_BUF_PATH="${S}/libs/string_buffer" HTS_PATH="/usr/include/" -C libs/seq_file + emake NUM_COLS=1 MAXK=31 cortex_var } src_install(){ |