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| author |   Andrew Ammerlaan <andrewammerlaan@gentoo.org> | 2023-04-25 13:25:25 +0200 |
|---|---|---|
| committer | Andrew Ammerlaan <andrewammerlaan@gentoo.org> | 2023-04-25 13:25:25 +0200 |
| commit | df1b752e2d45731e3ed75840ec6b2e04e314bd64 (patch) | |
| tree | 2e91e31070568320418bf481e79c95d711ce1f96 | |
| parent | dev-lang/pgi: treeclean (diff) | |
| download | sci-df1b752e2d45731e3ed75840ec6b2e04e314bd64.tar.gz sci-df1b752e2d45731e3ed75840ec6b2e04e314bd64.tar.bz2 sci-df1b752e2d45731e3ed75840ec6b2e04e314bd64.zip | |
sci-biology/signalp: treeclean
Bug: https://bugs.gentoo.org/902383
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
| -rw-r--r-- | profiles/package.mask | 1 | ||||
| -rw-r--r-- | sci-biology/signalp/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/signalp/metadata.xml | 8 | ||||
| -rw-r--r-- | sci-biology/signalp/signalp-3.0.ebuild | 46 |
4 files changed, 0 insertions, 56 deletions
diff --git a/profiles/package.mask b/profiles/package.mask index ba856cb7f..51da8d80c 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -41,7 +41,6 @@ sci-biology/RSeQC # Andrew Ammerlaan <andrewammerlaan@gentoo.org) (10 Feb 2023) # Fetch restricted ebuilds without proper manifest entry -sci-biology/signalp sci-biology/tmhmm sci-chemistry/ligplot+ sci-chemistry/nmrview diff --git a/sci-biology/signalp/Manifest b/sci-biology/signalp/Manifest deleted file mode 100644 index 4f4d96631..000000000 --- a/sci-biology/signalp/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST signalp-3.0.Linux.tar.Z 1216617 SHA256 260c2e5bd945b386e833a7b7326cff6d7332302868e99c0aeae306212047c0c2 diff --git a/sci-biology/signalp/metadata.xml b/sci-biology/signalp/metadata.xml deleted file mode 100644 index 8417d1580..000000000 --- a/sci-biology/signalp/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-biology/signalp/signalp-3.0.ebuild b/sci-biology/signalp/signalp-3.0.ebuild deleted file mode 100644 index dcd83d920..000000000 --- a/sci-biology/signalp/signalp-3.0.ebuild +++ /dev/null @@ -1,46 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -DESCRIPTION="Prediction of signal peptide cleavage sites in amino acid sequences" -HOMEPAGE="http://www.cbs.dtu.dk/services/SignalP/" -SRC_URI="${P}.Linux.tar.Z" - -LICENSE="signalp" -SLOT="0" -IUSE="gnuplot" -KEYWORDS="~amd64 ~x86" - -DEPEND="" -RDEPEND="gnuplot? ( - sci-visualization/gnuplot - media-libs/netpbm )" - -RESTRICT="fetch strip" - -pkg_nofetch() { - einfo "Please visit ${HOMEPAGE} and obtain the file" - einfo "\"${SRC_URI}\", then place it into your DISTDIR folder" -} - -src_prepare() { - default - sed -i -e '/SIGNALP=/ s/\/usr//' \ - -e '/TMPDIR=/ s/$SIGNALP//' "${S}/signalp" || die - sed -i 's/nawk/gawk/' "${S}"/bin/* || die -} - -src_install() { - dobin signalp - insinto /opt/${P} - doins -r bin hmm how mod syn* test - exeinto /opt/${P}/bin - doexe bin/* - exeinto /opt/${P}/hmm - doexe hmm/* - exeinto /opt/${P}/how - doexe how/* - doman signalp.1 - dodoc *readme -} |