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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2018-01-20 22:35:57 +0100 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2018-01-20 22:35:57 +0100 |
| commit | e4f568402bfead6e32904c59ce41578b7617b851 (patch) | |
| tree | 8cf8d96c0af25f380c3696dc845a8d43b2090133 | |
| parent | sci-biology/amos: no, sourceforge git:// does not run on https:// (diff) | |
| download | sci-e4f56840.tar.gz sci-e4f56840.tar.bz2 sci-e4f56840.zip | |
sci-biology/pilon-bin: new, albeit binary package
The sources are in scala language, btw.
Package-Manager: Portage-2.3.19, Repoman-2.3.6
| -rw-r--r-- | sci-biology/pilon-bin/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/pilon-bin/metadata.xml | 12 | ||||
| -rw-r--r-- | sci-biology/pilon-bin/pilon-bin-1.22.ebuild | 30 |
3 files changed, 43 insertions, 0 deletions
diff --git a/sci-biology/pilon-bin/Manifest b/sci-biology/pilon-bin/Manifest new file mode 100644 index 000000000..6eb24c298 --- /dev/null +++ b/sci-biology/pilon-bin/Manifest @@ -0,0 +1 @@ +DIST pilon-1.22.jar 6844881 BLAKE2B 780652d6109570a9f3451070bf0a8edc01ad36cbb6a2d05f86037a91a9130a18dd4e1d68607048ea25f2def8a14a501bcb0064398345215346ef2e378e699aa6 SHA512 f7cf4f865dfe76a88217595bf1dfa396a0b70677db19fc7f08372a420e879b4f7e7c90432b706768bc42978eb9710d4980946bd00aacacd4970a1e443cdbe579 diff --git a/sci-biology/pilon-bin/metadata.xml b/sci-biology/pilon-bin/metadata.xml new file mode 100644 index 000000000..138cb7705 --- /dev/null +++ b/sci-biology/pilon-bin/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="person"> + <email>mmokrejs@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>sci-biology@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/pilon-bin/pilon-bin-1.22.ebuild b/sci-biology/pilon-bin/pilon-bin-1.22.ebuild new file mode 100644 index 000000000..2284e6418 --- /dev/null +++ b/sci-biology/pilon-bin/pilon-bin-1.22.ebuild @@ -0,0 +1,30 @@ +# Copyright 1999-2018 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +inherit java-pkg-2 + +DESCRIPTION="Fix assembled reference using BAM-aligned reads, call SNPs" +HOMEPAGE="https://github.com/broadinstitute/pilon + https://github.com/broadinstitute/pilon/wiki" +SRC_URI="https://github.com/broadinstitute/pilon/releases/download/v${PV}/pilon-${PV}.jar" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND="dev-java/sbt + >=virtual/jdk-1.5:*" +RDEPEND="${DEPEND} + >=virtual/jre-1.5:* + >=dev-java/htsjdk-1.130" + +S="${WORKDIR}" + +src_install(){ + cp -p "${DISTDIR}"/pilon-${PV}.jar . || die + java-pkg_dojar pilon-${PV}.jar +} |