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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-03-30 23:25:16 +0200 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-03-30 23:25:16 +0200 |
| commit | eb4301c49eff60ce66d076810afbe5a0ed385f9e (patch) | |
| tree | 45609bd38c8d2947de75662f466d6342e96b77ac | |
| parent | sci-biology/arachne: new package; does not compile (upstream contacted) and t... (diff) | |
| download | sci-eb4301c4.tar.gz sci-eb4301c4.tar.bz2 sci-eb4301c4.zip | |
sci-biology/CONTIGuator: version bump; added KEYWORDS because DEPENDencies are in the tree now
Package-Manager: portage-2.2.28
| -rw-r--r-- | sci-biology/CONTIGuator/CONTIGuator-2.7.3.ebuild | 31 | ||||
| -rw-r--r-- | sci-biology/CONTIGuator/CONTIGuator-2.7.ebuild | 17 | ||||
| -rw-r--r-- | sci-biology/CONTIGuator/Manifest | 1 |
3 files changed, 32 insertions, 17 deletions
diff --git a/sci-biology/CONTIGuator/CONTIGuator-2.7.3.ebuild b/sci-biology/CONTIGuator/CONTIGuator-2.7.3.ebuild new file mode 100644 index 000000000..b86613b8b --- /dev/null +++ b/sci-biology/CONTIGuator/CONTIGuator-2.7.3.ebuild @@ -0,0 +1,31 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +DESCRIPTION="Speed up bacterial genome assemblies by artemis and compare chromosome regions" +HOMEPAGE="http://contiguator.sourceforge.net" +SRC_URI="http://downloads.sourceforge.net/project/contiguator/CONTIGuator_v2.7.tar.gz + https://sourceforge.net/projects/contiguator/files/README.md" + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND} + >=sci-biology/abacas-1.3.1 + sci-biology/primer3 + || ( sci-biology/ncbi-tools++ sci-biology/ncbi-blast+ ) + sci-biology/biopython + sci-biology/mummer + || ( sci-biology/artemis || ( sci-biology/artemis-bin sci-biology/act-bin ) )" + +S="${WORKDIR}"/CONTIGuator_v"${PV}" + +src_install(){ + dobin CONTIGuator.py + dodoc Manual.pdf "${DISTDIR}"/README.md +} diff --git a/sci-biology/CONTIGuator/CONTIGuator-2.7.ebuild b/sci-biology/CONTIGuator/CONTIGuator-2.7.ebuild deleted file mode 100644 index 6609fc062..000000000 --- a/sci-biology/CONTIGuator/CONTIGuator-2.7.ebuild +++ /dev/null @@ -1,17 +0,0 @@ -# Copyright 1999-2014 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=5 - -DESCRIPTION="Speed up bacterial genome assemblies by artemis and compare chromosome regions" -HOMEPAGE="http://contiguator.sourceforge.net" -SRC_URI="http://downloads.sourceforge.net/project/contiguator/CONTIGuator_v2.7.tar.gz" - -LICENSE="GPL-3" -SLOT="0" -KEYWORDS="" -IUSE="" - -DEPEND="( sci-biology/artemis sci-biology/artemis-bin )" -RDEPEND="${DEPEND}" diff --git a/sci-biology/CONTIGuator/Manifest b/sci-biology/CONTIGuator/Manifest index a0dba3efa..480e6cc23 100644 --- a/sci-biology/CONTIGuator/Manifest +++ b/sci-biology/CONTIGuator/Manifest @@ -1 +1,2 @@ DIST CONTIGuator_v2.7.tar.gz 2348570 SHA256 f220dedc85185c168d3164361571225393b7176368237ad2eaa29222a5287da2 SHA512 a958ea6b8a80132460d66075659d637d662f57573a92bca772491e7a5b9fe2436e77b844c0a8e2309646b87771fe56f2a1262c3a6d2054a947fd239166e81718 WHIRLPOOL 8ab9493207297609bd707b1d70e2784675d5c120a4ae4b4e2d883af2e01636e021042601e3f13b5f30b964e5284dcef8e284a5af1129884439bd21208e9b257e +DIST README.md 8033 SHA256 eaad938a549ac645ce923e80d9244fc9e2f6490c7de96befad3e8fd877cfa215 SHA512 3f57c28c19c3ce67e30feb82a2e616a44aab6a6b70d418f81e335c9e1a862ec501c844bc7c2065ce2c1c6f1e2c44d93f647c96896ccf473c8916cc1d786e6420 WHIRLPOOL 3501466eaf0fb85115cb607e62b19cc634feee2d85ed27af8f709843f9c3e64cbce71cfccafcb24b1ef70dcb5c7f40a683bad8cfb03f490031aeb805bdd91b8e |