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| author |   Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2018-03-31 01:13:32 +0200 |
|---|---|---|
| committer | Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2018-03-31 01:13:32 +0200 |
| commit | ee649bc48962c51c37ae92acdd85e65f480e48bf (patch) | |
| tree | 7eb13670f3697a74f5634ce83929daf01f2d9c82 | |
| parent | sci-mathematics/petsc: version bump to 3.8.4 (diff) | |
| download | sci-ee649bc4.tar.gz sci-ee649bc4.tar.bz2 sci-ee649bc4.zip | |
sci-biology/bamql: new package
Package-Manager: Portage-2.3.24, Repoman-2.3.6
| -rw-r--r-- | sci-biology/bamql/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/bamql/bamql-1.5.ebuild | 28 | ||||
| -rw-r--r-- | sci-biology/bamql/metadata.xml | 12 |
3 files changed, 41 insertions, 0 deletions
diff --git a/sci-biology/bamql/Manifest b/sci-biology/bamql/Manifest new file mode 100644 index 000000000..984d254f7 --- /dev/null +++ b/sci-biology/bamql/Manifest @@ -0,0 +1 @@ +DIST bamql-1.5.tar.gz 64857 BLAKE2B 264653e2caffb7d82bb765eb6bcc5c4b4d25f0abda7c0baf5cbf92f656bc2a46a0d615c503e60ab95fda27862ab1590f4c8314f9d796b41ce665d10833d921ac SHA512 f2c690f6ad91c28c5993d385038e355d4cffbf1ee783cbf81a8459c2786d4406de0f310cc5f9d4abe9dc59bdd7a41442597fd5b34e7cc8db1af7bc9bd0ef089f diff --git a/sci-biology/bamql/bamql-1.5.ebuild b/sci-biology/bamql/bamql-1.5.ebuild new file mode 100644 index 000000000..ef78e3753 --- /dev/null +++ b/sci-biology/bamql/bamql-1.5.ebuild @@ -0,0 +1,28 @@ +# Copyright 1999-2018 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit autotools + +DESCRIPTION="Extract reads from BAM files" +HOMEPAGE="https://github.com/BoutrosLaboratory/bamql + https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1162-y" +SRC_URI="https://github.com/BoutrosLaboratory/bamql/archive/v1.5.tar.gz -> ${P}.tar.gz" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +DEPEND=" + sys-devel/llvm:= + sys-apps/util-linux + sci-libs/htslib + dev-libs/libpcre" +RDEPEND="${DEPEND}" + +src_prepare(){ + eautoreconf + default +} diff --git a/sci-biology/bamql/metadata.xml b/sci-biology/bamql/metadata.xml new file mode 100644 index 000000000..138cb7705 --- /dev/null +++ b/sci-biology/bamql/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="person"> + <email>mmokrejs@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>sci-biology@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata> |