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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2015-01-07 23:29:27 +0100 |
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| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2015-01-07 23:29:27 +0100 |
| commit | f16a3ab142fe2668ba1985cdc09c3c0a6f8840c7 (patch) | |
| tree | 47c2ac0f0e5d86529ede5fa27c40ae63ea94cded | |
| parent | bioperl/bioperl-1.6.901: dropped an ebuild with USE=+static, otherwise same i... (diff) | |
| download | sci-f16a3ab142fe2668ba1985cdc09c3c0a6f8840c7.tar.gz sci-f16a3ab142fe2668ba1985cdc09c3c0a6f8840c7.tar.bz2 sci-f16a3ab142fe2668ba1985cdc09c3c0a6f8840c7.zip | |
Initial ebuild
| -rw-r--r-- | sci-biology/BRANCH/BRANCH-9999.ebuild | 37 | ||||
| -rw-r--r-- | sci-biology/BRANCH/ChangeLog | 10 | ||||
| -rw-r--r-- | sci-biology/BRANCH/metadata.xml | 9 |
3 files changed, 56 insertions, 0 deletions
diff --git a/sci-biology/BRANCH/BRANCH-9999.ebuild b/sci-biology/BRANCH/BRANCH-9999.ebuild new file mode 100644 index 000000000..74be1b12e --- /dev/null +++ b/sci-biology/BRANCH/BRANCH-9999.ebuild @@ -0,0 +1,37 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +[ "$PV" == "9999" ] && inherit git-2 + +inherit eutils + +DESCRIPTION="Extend partial transcripts with sequence from other reads or genomic contigs" +HOMEPAGE="" +if [ "$PV" == "9999" ]; then + EGIT_REPO_URI="https://github.com/baoe/BRANCH" + KEYWORDS="" +else + SRC_URI="" + KEYWORDS="" +fi + + +LICENSE="Artistic-2" +SLOT="0" +IUSE="" + +DEPEND="sci-biology/blat + sci-libs/lemon" +RDEPEND="${DEPEND}" + +src_compile(){ + cd BRANCH || die + g++ -o BRANCH BRANCH.cpp -lemon -lpthread || die +} + +src_install(){ + dobin BRANCH/BRANCH +} diff --git a/sci-biology/BRANCH/ChangeLog b/sci-biology/BRANCH/ChangeLog new file mode 100644 index 000000000..8954ba6d4 --- /dev/null +++ b/sci-biology/BRANCH/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/BRANCH +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*BRANCH-9999 (07 Jan 2015) + + 07 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> + +BRANCH-9999.ebuild, +metadata.xml: + initial ebuild + diff --git a/sci-biology/BRANCH/metadata.xml b/sci-biology/BRANCH/metadata.xml new file mode 100644 index 000000000..2bc893037 --- /dev/null +++ b/sci-biology/BRANCH/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>mmokrejs@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata> |