diff options
| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2015-04-30 23:16:20 +0200 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2015-04-30 23:16:20 +0200 |
| commit | fbb39ffdcd8232fb3e7346355f4d7b50eb429dc1 (patch) | |
| tree | 6eb58005037333118a50cab48ac173d6c8a8ed85 | |
| parent | sci-biology/quorum: avoid full path on linker commandline /usr/lib64/libjelly... (diff) | |
| download | sci-fbb39ffd.tar.gz sci-fbb39ffd.tar.bz2 sci-fbb39ffd.zip | |
sci-biology/MaSuRCA: version bump
Package-Manager: portage-2.2.18
| -rw-r--r-- | sci-biology/MaSuRCA/ChangeLog | 8 | ||||
| -rw-r--r-- | sci-biology/MaSuRCA/MaSuRCA-2.3.2b.ebuild (renamed from sci-biology/MaSuRCA/MaSuRCA-2.1.0.ebuild) | 26 | ||||
| -rw-r--r-- | sci-biology/MaSuRCA/Manifest | 2 |
3 files changed, 18 insertions, 18 deletions
diff --git a/sci-biology/MaSuRCA/ChangeLog b/sci-biology/MaSuRCA/ChangeLog index e9d6a2cee..4014eea12 100644 --- a/sci-biology/MaSuRCA/ChangeLog +++ b/sci-biology/MaSuRCA/ChangeLog @@ -1,7 +1,13 @@ # ChangeLog for sci-biology/MaSuRCA -# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ +*MaSuRCA-2.3.2b (30 Apr 2015) + + 30 Apr 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> + +MaSuRCA-2.3.2b.ebuild, -MaSuRCA-2.1.0.ebuild: + sci-biology/MaSuRCA: version bump + 16 Sep 2014; Christoph Junghans <ottxor@gentoo.org> MaSuRCA-2.1.0.ebuild: added license diff --git a/sci-biology/MaSuRCA/MaSuRCA-2.1.0.ebuild b/sci-biology/MaSuRCA/MaSuRCA-2.3.2b.ebuild index 04e817245..01eeeeb46 100644 --- a/sci-biology/MaSuRCA/MaSuRCA-2.1.0.ebuild +++ b/sci-biology/MaSuRCA/MaSuRCA-2.3.2b.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2014 Gentoo Foundation +# Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: $ @@ -16,33 +16,27 @@ IUSE="" DEPEND="dev-lang/perl app-arch/bzip2" -RDEPEND="${DEPEND}" - #sci-biology/quorum" +RDEPEND="${DEPEND} + >=sci-biology/quorum-0.2.1 + >=sci-biology/jellyfish-1.1.11" # the ebuild mimics "${S}"/install.sh src_configure(){ - cd jellyfish-1.1.11 || die + cd jellyfish || die econf - cd ../jellyfish-2.0.0rc1 || die - econf --program-suffix=-2.0 - cd ../CA/kmer || die - sh ./configure.sh econf - cd ../../SuperReads-0.3.2 || die + cd ../../SuperReads || die econf - cd ../quorum-0.3.2 || die + cd ../quorum || die econf --enable-relative-paths --with-relative-jf-path } src_compile(){ - cd jellyfish-1.1.11 || die - emake - - cd ../jellyfish-2.0.0rc1 || die + cd jellyfish || die emake cd ../CA/kmer || die @@ -51,10 +45,10 @@ src_compile(){ cd ../../CA/src || die emake - cd ../SuperReads-0.3.2 || die + cd ../SuperReads || die emake - cd ../quorum-0.3.2 || die + cd ../quorum || die emake } diff --git a/sci-biology/MaSuRCA/Manifest b/sci-biology/MaSuRCA/Manifest index 73d86433e..3366274b4 100644 --- a/sci-biology/MaSuRCA/Manifest +++ b/sci-biology/MaSuRCA/Manifest @@ -1,2 +1,2 @@ -DIST MaSuRCA-2.1.0.tar.gz 8333371 SHA256 c0e816cc461af55972b4fc55351ab5943026eb5e0553ddf3cc316b3c44ffd49c SHA512 1b095148b4083503953ba9c745ca587870b7f605f02b1d5c5c733753c1e3d0f630c9925cedb8b1b4318356bc42124a26191e14d0587613007ccdf00d65b58c07 WHIRLPOOL af72eebbf80b105f9524601bbddb66f4781a44b91d526871038fd6902999bbe5d39bed927a3b081c93dc7ea95a40b3918c510723cc03271c6ff1534a1b7142f8 +DIST MaSuRCA-2.3.2b.tar.gz 7506105 SHA256 837cb144d3dba206a778e88a06f2af67f2cc9ca4f5e6e97dd48ad4ac783aec70 SHA512 042040899a8fafe99145390701f2ced0d100cebf4abad4d5d02ccfe3cfe4406e0a887740752ae81a75fc055629c1580c3f99dff007e4330190c732164cad0f35 WHIRLPOOL ef123be71b4deaaec961451fdc6250162d222345ba1307c59dc8f4ba6deddc52f25ee269b9d5b5ce44bab1f2332018c10da0cc9386e1a49718338c88516507b4 DIST MaSuRCA_QuickStartGuide.pdf 152644 SHA256 3a1e9fa83608f6138355aa0e6c5b1db337e2fca67d0a7275c0b54e85780e421d SHA512 e911a7b092f68a1f60e45c996e25b53b65260fad9e465488d30a066b00db2cdef0e0bb422d9731d37cfa3958eac74943d54019ac9e538560b66da0a64d6ce800 WHIRLPOOL a7d1ef0798b0ee0810b0fe6ac6bda4e0b6f4655a7109d5dc5dfc797ed6669ad5353a2f3b988e9efe1dcde485dc69bdc2b1d3887ee2d026e99cf8a14fe4075a95 |