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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-03-30 16:35:37 +0200 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-03-30 16:35:37 +0200 |
| commit | fdadb1aefebd39ecb3836948d4008deba80cb903 (patch) | |
| tree | 5ef022e636697e51c59516c863154c6e7a8282d0 | |
| parent | sci-biology/artemis: install docs, cleanup ebuild and bring it in sync with s... (diff) | |
| download | sci-fdadb1ae.tar.gz sci-fdadb1ae.tar.bz2 sci-fdadb1ae.zip | |
sci-biology/perga: added some LICENSE, fix CFLAGS
Package-Manager: portage-2.2.28
| -rw-r--r-- | sci-biology/perga/metadata.xml | 12 | ||||
| -rw-r--r-- | sci-biology/perga/perga-9999.ebuild | 36 |
2 files changed, 48 insertions, 0 deletions
diff --git a/sci-biology/perga/metadata.xml b/sci-biology/perga/metadata.xml new file mode 100644 index 000000000..f68a1b6fa --- /dev/null +++ b/sci-biology/perga/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="person"> + <email>mmokrejs@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>sci-biology@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/perga/perga-9999.ebuild b/sci-biology/perga/perga-9999.ebuild new file mode 100644 index 000000000..4f79d7210 --- /dev/null +++ b/sci-biology/perga/perga-9999.ebuild @@ -0,0 +1,36 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit git-r3 eutils toolchain-funcs + +DESCRIPTION="Paired End Reads Guided Assembler" +HOMEPAGE="https://github.com/hitbio/PERGA + http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4252104" +EGIT_REPO_URI="https://github.com/hitbio/PERGA.git" + +LICENSE="all-rights-reserved" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND}" + +src_prepare(){ + sed -e "s/gcc -g /$(tc-getCC) ${CFLAGS} ${LDFLAGS} /" -i src/Makefile || die + sed -e 's/-Wl,-O1//' -i src/Makefile || die +} + +# does not compile with gcc-5.3.0 but 4.9.3 works +src_compile(){ + cd src || die + emake +} + +src_install(){ + dobin src/perga + dodoc README +} |