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| author |   Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2012-01-08 16:49:57 +0100 |
|---|---|---|
| committer | Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2012-01-08 16:49:57 +0100 |
| commit | 1afb461b204933db48bfe976a37203c92846930d (patch) | |
| tree | b06b4dbb5ae68b8574c431421e8fa04074ac22e2 /sci-biology/artemis/artemis-9999.ebuild | |
| parent | dev-python/GOGrapher: more robust version from same author is at https://gith... (diff) | |
| download | sci-1afb461b204933db48bfe976a37203c92846930d.tar.gz sci-1afb461b204933db48bfe976a37203c92846930d.tar.bz2 sci-1afb461b204933db48bfe976a37203c92846930d.zip | |
sci-biology/artemis: DNA sequence viewer, annotation (Artemis) and comparison (ACT) tool
Diffstat (limited to 'sci-biology/artemis/artemis-9999.ebuild')
| -rw-r--r-- | sci-biology/artemis/artemis-9999.ebuild | 39 |
1 files changed, 39 insertions, 0 deletions
diff --git a/sci-biology/artemis/artemis-9999.ebuild b/sci-biology/artemis/artemis-9999.ebuild new file mode 100644 index 000000000..ff8d52d17 --- /dev/null +++ b/sci-biology/artemis/artemis-9999.ebuild @@ -0,0 +1,39 @@ +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=3 + +inherit java-pkg-2 java-ant-2 + +[ "$PV" == "9999" ] && inherit git-2 + +DESCRIPTION="DNA sequence viewer, annotation (Artemis) and comparison (ACT) tool" +HOMEPAGE="http://www.sanger.ac.uk/resources/software/artemis" + +if [ "$PV" == "9999" ]; then + EGIT_REPO_URI="https://github.com/sanger-pathogens/Artemis" + KEYWORDS="" +else + SRC_URI="ftp://ftp.sanger.ac.uk/pub4/resources/software/artemis/v13/v"${PV}"/artemis_compiled_v"${PV}".tar.gz" + KEYWORDS="~amd64 ~x86" +fi + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +DEPEND="sci-biology/samtools + sci-biology/bamview + >=virtual/jdk-1.5 + >=dev-java/sun-jdk-1.5 + dev-java/ant-core" +RDEPEND="${DEPEND} + >=virtual/jre-1.5" + +src_compile() { + ant compile || die + + einfo "Need to figure out where does the GeneBuilder application come from so that one could use Chado for automated gene prediction pipeline" +} |