diff options
| author |   Justin Lecher <jlec@gentoo.org> | 2014-01-06 20:02:45 +0100 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2014-01-06 20:02:45 +0100 |
| commit | 420e46ff1a1f7709757fae778140fb53c24189d0 (patch) | |
| tree | cf01e3c789349d1203dfedc25eb7a186dee3840f /sci-biology/artemis | |
| parent | sci-biology/bamtools: Switch from git-2 to git-r3 (diff) | |
| download | sci-420e46ff1a1f7709757fae778140fb53c24189d0.tar.gz sci-420e46ff1a1f7709757fae778140fb53c24189d0.tar.bz2 sci-420e46ff1a1f7709757fae778140fb53c24189d0.zip | |
sci-biology/artemis: Switch from git-2 to git-r3
Package-Manager: portage-2.2.8
Diffstat (limited to 'sci-biology/artemis')
| -rw-r--r-- | sci-biology/artemis/ChangeLog | 6 | ||||
| -rw-r--r-- | sci-biology/artemis/artemis-9999.ebuild | 34 | ||||
| -rw-r--r-- | sci-biology/artemis/metadata.xml | 10 |
3 files changed, 20 insertions, 30 deletions
diff --git a/sci-biology/artemis/ChangeLog b/sci-biology/artemis/ChangeLog index a992d601a..56cbedcbe 100644 --- a/sci-biology/artemis/ChangeLog +++ b/sci-biology/artemis/ChangeLog @@ -1,7 +1,11 @@ # ChangeLog for sci-biology/artemis -# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 06 Jan 2014; Justin Lecher <jlec@gentoo.org> artemis-9999.ebuild, + metadata.xml: + Switch from git-2 to git-r3 + 07 Feb 2012; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> artemis-9999.ebuild: sci-biology/artemis: adjust ebuild based on upstream providing a Makefile diff --git a/sci-biology/artemis/artemis-9999.ebuild b/sci-biology/artemis/artemis-9999.ebuild index 448197500..ca3ddf172 100644 --- a/sci-biology/artemis/artemis-9999.ebuild +++ b/sci-biology/artemis/artemis-9999.ebuild @@ -1,23 +1,15 @@ -# Copyright 1999-2012 Gentoo Foundation +# Copyright 1999-2014 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: $ -EAPI=3 +EAPI=5 -inherit java-pkg-2 java-ant-2 - -[ "$PV" == "9999" ] && inherit git-2 +inherit java-pkg-2 java-ant-2 git-r3 DESCRIPTION="DNA sequence viewer, annotation (Artemis) and comparison (ACT) tool" HOMEPAGE="http://www.sanger.ac.uk/resources/software/artemis" - -if [ "$PV" == "9999" ]; then - EGIT_REPO_URI="https://github.com/sanger-pathogens/Artemis" - KEYWORDS="~amd64 ~x86" -else - SRC_URI="ftp://ftp.sanger.ac.uk/pub4/resources/software/artemis/v13/v"${PV}"/artemis_compiled_v"${PV}".tar.gz" - KEYWORDS="~amd64 ~x86" -fi +SRC_URI="" +EGIT_REPO_URI="https://github.com/sanger-pathogens/Artemis" LICENSE="GPL-2" SLOT="0" @@ -25,19 +17,13 @@ KEYWORDS="" IUSE="" # uses its own BamView -DEPEND="sci-biology/samtools - >=virtual/jdk-1.5 - >=dev-java/sun-jdk-1.5 - dev-java/ant-core" +DEPEND=" + sci-biology/samtools + >=virtual/jdk-1.5 + dev-java/ant-core" RDEPEND="${DEPEND} - >=virtual/jre-1.5" + >=virtual/jre-1.5" # http://www.mail-archive.com/artemis-users@sanger.ac.uk/msg00551.html # http://www.mail-archive.com/artemis-users@sanger.ac.uk/msg00561.html # http://gmod.org/wiki/Artemis-Chado_Integration_Tutorial -src_compile() { - emake || die - # ant compile || die - - einfo "Need to figure out where does the GeneBuilder application come from so that one could use Chado for automated gene prediction pipeline" -} diff --git a/sci-biology/artemis/metadata.xml b/sci-biology/artemis/metadata.xml index 07b525505..2bc893037 100644 --- a/sci-biology/artemis/metadata.xml +++ b/sci-biology/artemis/metadata.xml @@ -1,9 +1,9 @@ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> - <herd>sci-biology</herd> - <maintainer> - <email>mmokrejs@fold.natur.cuni.cz</email> - <name>Martin Mokrejs</name> - </maintainer> + <herd>sci-biology</herd> + <maintainer> + <email>mmokrejs@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> </pkgmetadata> |