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authorAndrew Ammerlaan <andrewammerlaan@riseup.net>2021-03-20 11:29:45 +0100
committerAndrew Ammerlaan <andrewammerlaan@riseup.net>2021-03-20 11:29:45 +0100
commita2bab97dd79b9cef877b3564447074fccc1ee8bc (patch)
treee47a4b9e853714e69683c8523bed441da5997165 /sci-biology/grass/grass-9999.ebuild
parentsci-biology/dna2pep: remove masked package (diff)
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sci-biology/grass: remove masked package
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Diffstat (limited to 'sci-biology/grass/grass-9999.ebuild')
-rw-r--r--sci-biology/grass/grass-9999.ebuild41
1 files changed, 0 insertions, 41 deletions
diff --git a/sci-biology/grass/grass-9999.ebuild b/sci-biology/grass/grass-9999.ebuild
deleted file mode 100644
index 6d60c4427..000000000
--- a/sci-biology/grass/grass-9999.ebuild
+++ /dev/null
@@ -1,41 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit git-r3 eutils
-
-DESCRIPTION="Scaffold next-generation sequencing assemblies"
-HOMEPAGE="https://github.com/AlexeyG/GRASS"
-#SRC_URI="https://github.com/AlexeyG/GRASS/archive/master.zip -> grass-20130628.zip
-# https://tud-scaffolding.googlecode.com/files/GRASS%20manual.pdf -> grass_manual.pdf"
-EGIT_REPO_URI="https://github.com/AlexeyG/GRASS.git"
-
-LICENSE="GPL-3"
-SLOT="0"
-KEYWORDS=""
-IUSE=""
-
-# some IBM development CPLEX library?
-# ilcplex/ilocplex.h: No such file or directory
-# https://github.com/AlexeyG/GRASS/issues/6
-DEPEND="sci-biology/bamtools
- sci-biology/ncbi-tools++
- sys-cluster/openmpi"
-RDEPEND="${DEPEND}"
-
-src_prepare(){
- epatch "${FILESDIR}"/fix_Makefile_variablenames.patch
-# sed -e 's#/data/bio/alexeygritsenk/apps/include/ncbi-tools++#/usr/include/ncbi-tools++#' -i Makefile.config || die
-# sed -e 's#/data/bio/alexeygritsenk/apps/include/#/usr/include/bamtools#' -i Makefile.config || die
-# sed -e 's#/data/bio/alexeygritsenk/apps/lib#/usr/lib64#' -i Makefile.config || die
-}
-
-src_compile(){
- emake all
-}
-
-src_install(){
- newdoc manual/manual.pdf grass_manual.pdf
- dobin bin/*
-}