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author | Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-03-20 11:29:45 +0100 |
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committer | Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-03-20 11:29:45 +0100 |
commit | a2bab97dd79b9cef877b3564447074fccc1ee8bc (patch) | |
tree | e47a4b9e853714e69683c8523bed441da5997165 /sci-biology/grass/grass-9999.ebuild | |
parent | sci-biology/dna2pep: remove masked package (diff) | |
download | sci-a2bab97dd79b9cef877b3564447074fccc1ee8bc.tar.gz sci-a2bab97dd79b9cef877b3564447074fccc1ee8bc.tar.bz2 sci-a2bab97dd79b9cef877b3564447074fccc1ee8bc.zip |
sci-biology/grass: remove masked package
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Diffstat (limited to 'sci-biology/grass/grass-9999.ebuild')
-rw-r--r-- | sci-biology/grass/grass-9999.ebuild | 41 |
1 files changed, 0 insertions, 41 deletions
diff --git a/sci-biology/grass/grass-9999.ebuild b/sci-biology/grass/grass-9999.ebuild deleted file mode 100644 index 6d60c4427..000000000 --- a/sci-biology/grass/grass-9999.ebuild +++ /dev/null @@ -1,41 +0,0 @@ -# Copyright 1999-2016 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit git-r3 eutils - -DESCRIPTION="Scaffold next-generation sequencing assemblies" -HOMEPAGE="https://github.com/AlexeyG/GRASS" -#SRC_URI="https://github.com/AlexeyG/GRASS/archive/master.zip -> grass-20130628.zip -# https://tud-scaffolding.googlecode.com/files/GRASS%20manual.pdf -> grass_manual.pdf" -EGIT_REPO_URI="https://github.com/AlexeyG/GRASS.git" - -LICENSE="GPL-3" -SLOT="0" -KEYWORDS="" -IUSE="" - -# some IBM development CPLEX library? -# ilcplex/ilocplex.h: No such file or directory -# https://github.com/AlexeyG/GRASS/issues/6 -DEPEND="sci-biology/bamtools - sci-biology/ncbi-tools++ - sys-cluster/openmpi" -RDEPEND="${DEPEND}" - -src_prepare(){ - epatch "${FILESDIR}"/fix_Makefile_variablenames.patch -# sed -e 's#/data/bio/alexeygritsenk/apps/include/ncbi-tools++#/usr/include/ncbi-tools++#' -i Makefile.config || die -# sed -e 's#/data/bio/alexeygritsenk/apps/include/#/usr/include/bamtools#' -i Makefile.config || die -# sed -e 's#/data/bio/alexeygritsenk/apps/lib#/usr/lib64#' -i Makefile.config || die -} - -src_compile(){ - emake all -} - -src_install(){ - newdoc manual/manual.pdf grass_manual.pdf - dobin bin/* -} |