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authorJustin Lecher <jlec@gentoo.org>2014-10-26 17:16:03 +0100
committerJustin Lecher <jlec@gentoo.org>2014-10-26 17:16:03 +0100
commit5e17effe61fea1a19ee87b9699f7d96306382874 (patch)
treebf2fb53c45f1c2f315ffd4f4534ad4ab86240e52 /sci-chemistry/freeon
parentMoved to tree (diff)
parentsci-physics/root: Fix compilation with USE="mysql" wrt bug #523996; fix die_c... (diff)
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Merge remote-tracking branch 'github/master'
* github/master: (66 commits) sci-physics/root: Fix compilation with USE="mysql" wrt bug #523996; fix die_compiler message sync with gx86 net-libs/xrootd: version bump and fix bug 521496 travis.yml: use newer portage version fixed bash-comp (bug #526320) version bump sci-chemistry/pymol: Patch included upstream sci-chemistry/pymol: Fix broken plugin listing dev-python/ccdproc: Version bump to 0.2.1 Thanks to kiwifb for reporting https://github.com/gentoo-science/sci/issues/280 - Fix openblas: discrepancy between installed libraries and .pc file. Thanks to kiwifb for reporting https://github.com/gentoo-science/sci/issues/280 - Fix openblas: discrepancy between installed libraries and .pc file. sci-chemistry/pymol: Fix upstream buildsystem The fix for Bug 524612 failed in src_install building openblas from git. The fix is to move applying the patch to src_compile after building the library, then remove config.h and config_last.h; make config.h - ignoring the spurious warning; then cp config.h to config_last.h. Fix Bug 524612 - [science overlay] sci-libs/openblas-0.2.11 - Assembler messages: ../kernel/x86_64/gemm_kernel_8x4_barcelona.S:451: Error: missing ')', thanks to Juergen Rose, Jean-Francis Roy and Steven Trogdon for reporting. The problem was that applying the -0.2.11-openblas_config_header_same_between_ABIs.patch patch in src_prepare() causes build failures on assembler code as the assembler does not understand sizeof(float). So delay applying the patch until src_install(). Bump openblas to 0.2.12. dev-python/ccdproc: Version bump to 0.2.1 dev-cpp/eigen: version bump sci-chemistry/pymol: Import tree changes version bump sys-cluster/openmpi: bump sys-cluster/openmpi: bump ...
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