diff options
71 files changed, 286 insertions, 95 deletions
diff --git a/dev-python/ffc/metadata.xml b/dev-python/ffc/metadata.xml index 893659eac..212522c3e 100644 --- a/dev-python/ffc/metadata.xml +++ b/dev-python/ffc/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci</herd> @@ -9,8 +9,9 @@ combine generality with efficiency; the form can be given in mathematical notation and the generated code is as efficient as hand-optimized code. - </longdescription> + </longdescription> <upstream> <remote-id type="bitbucket">fenics-project/ffc</remote-id> + <remote-id type="launchpad">ffc</remote-id> </upstream> </pkgmetadata> diff --git a/dev-python/fiat/metadata.xml b/dev-python/fiat/metadata.xml index b9c29fa54..33066d939 100644 --- a/dev-python/fiat/metadata.xml +++ b/dev-python/fiat/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci</herd> @@ -14,5 +14,6 @@ </longdescription> <upstream> <remote-id type="bitbucket">fenics-project/fiat</remote-id> + <remote-id type="launchpad">fiat</remote-id> </upstream> </pkgmetadata> diff --git a/dev-python/instant/metadata.xml b/dev-python/instant/metadata.xml index 37fa71c43..fd75a3314 100644 --- a/dev-python/instant/metadata.xml +++ b/dev-python/instant/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci</herd> @@ -9,5 +9,6 @@ </longdescription> <upstream> <remote-id type="bitbucket">fenics-project/instant</remote-id> + <remote-id type="launchpad">instant</remote-id> </upstream> </pkgmetadata> diff --git a/dev-python/ipykernel/metadata.xml b/dev-python/ipykernel/metadata.xml index e13dd8b00..52d077b8f 100644 --- a/dev-python/ipykernel/metadata.xml +++ b/dev-python/ipykernel/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci</herd> @@ -7,5 +7,6 @@ </longdescription> <upstream> <remote-id type="pypi">ipykernel</remote-id> + <remote-id type="github">ipython/ipykernel</remote-id> </upstream> </pkgmetadata> diff --git a/dev-python/metakernel/metadata.xml b/dev-python/metakernel/metadata.xml index be095aee3..b6105fd53 100644 --- a/dev-python/metakernel/metadata.xml +++ b/dev-python/metakernel/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci</herd> @@ -9,5 +9,6 @@ </longdescription> <upstream> <remote-id type="pypi">metakernel</remote-id> + <remote-id type="github">Calysto/metakernel</remote-id> </upstream> </pkgmetadata> diff --git a/dev-python/metakernel_bash/metadata.xml b/dev-python/metakernel_bash/metadata.xml index 9e6119aea..9cfacff47 100644 --- a/dev-python/metakernel_bash/metadata.xml +++ b/dev-python/metakernel_bash/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci</herd> @@ -7,5 +7,6 @@ </longdescription> <upstream> <remote-id type="pypi">metakernel_bash</remote-id> + <remote-id type="github">Calysto/metakernel</remote-id> </upstream> </pkgmetadata> diff --git a/dev-python/metakernel_python/metadata.xml b/dev-python/metakernel_python/metadata.xml index 8bebad5bc..2b5e17e36 100644 --- a/dev-python/metakernel_python/metadata.xml +++ b/dev-python/metakernel_python/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci</herd> @@ -7,5 +7,6 @@ </longdescription> <upstream> <remote-id type="pypi">metakernel_python</remote-id> + <remote-id type="github">Calysto/metakernel</remote-id> </upstream> </pkgmetadata> diff --git a/dev-python/pythonqt/metadata.xml b/dev-python/pythonqt/metadata.xml index 897aa2e6b..84f9d450d 100644 --- a/dev-python/pythonqt/metadata.xml +++ b/dev-python/pythonqt/metadata.xml @@ -1,5 +1,8 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci</herd> + <upstream> + <remote-id type="sourceforge">pythonqt</remote-id> + </upstream> </pkgmetadata> diff --git a/dev-python/ufl/metadata.xml b/dev-python/ufl/metadata.xml index ddf216c08..523b25eee 100644 --- a/dev-python/ufl/metadata.xml +++ b/dev-python/ufl/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci</herd> @@ -14,5 +14,6 @@ </use> <upstream> <remote-id type="bitbucket">fenics-project/ufl</remote-id> + <remote-id type="launchpad">ufl</remote-id> </upstream> </pkgmetadata> diff --git a/dev-tcltk/img_rotate/metadata.xml b/dev-tcltk/img_rotate/metadata.xml index d369d068f..26d5c1167 100644 --- a/dev-tcltk/img_rotate/metadata.xml +++ b/dev-tcltk/img_rotate/metadata.xml @@ -1,5 +1,8 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci</herd> + <upstream> + <remote-id type="sourceforge">cardtable</remote-id> + </upstream> </pkgmetadata> diff --git a/media-gfx/brlcad/metadata.xml b/media-gfx/brlcad/metadata.xml index f44bc800b..55327bf33 100644 --- a/media-gfx/brlcad/metadata.xml +++ b/media-gfx/brlcad/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci</herd> @@ -25,10 +25,13 @@ geometric editing, and also an implementation of Weiler's n-Manifold Geometry (NMG) data structures for surface-based solid models and photon mapping. -</longdescription> + </longdescription> <use> <flag name="benchmarks"> Run benchmarks during test phase (need test option enabled) - </flag> + </flag> </use> + <upstream> + <remote-id type="sourceforge">brlcad</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-biology/BBmap/metadata.xml b/sci-biology/BBmap/metadata.xml index 2bc893037..5a16160bb 100644 --- a/sci-biology/BBmap/metadata.xml +++ b/sci-biology/BBmap/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> @@ -6,4 +6,7 @@ <email>mmokrejs@fold.natur.cuni.cz</email> <name>Martin Mokrejs</name> </maintainer> + <upstream> + <remote-id type="sourceforge">bbmap</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-biology/BamView/metadata.xml b/sci-biology/BamView/metadata.xml index 462eb581b..b78a98777 100644 --- a/sci-biology/BamView/metadata.xml +++ b/sci-biology/BamView/metadata.xml @@ -1,8 +1,11 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> <maintainer> <email>mmokrejs@fold.natur.cuni.cz</email> </maintainer> + <upstream> + <remote-id type="sourceforge">bamview</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-biology/CONTIGuator/metadata.xml b/sci-biology/CONTIGuator/metadata.xml index 2bc893037..3dd7dfdce 100644 --- a/sci-biology/CONTIGuator/metadata.xml +++ b/sci-biology/CONTIGuator/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> @@ -6,4 +6,7 @@ <email>mmokrejs@fold.natur.cuni.cz</email> <name>Martin Mokrejs</name> </maintainer> + <upstream> + <remote-id type="sourceforge">contiguator</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-biology/EBARDenovo/metadata.xml b/sci-biology/EBARDenovo/metadata.xml index 2bc893037..0e1efe220 100644 --- a/sci-biology/EBARDenovo/metadata.xml +++ b/sci-biology/EBARDenovo/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> @@ -6,4 +6,7 @@ <email>mmokrejs@fold.natur.cuni.cz</email> <name>Martin Mokrejs</name> </maintainer> + <upstream> + <remote-id type="sourceforge">ebardenovo</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-biology/FLASH/metadata.xml b/sci-biology/FLASH/metadata.xml index 2bc893037..cc10e6dfa 100644 --- a/sci-biology/FLASH/metadata.xml +++ b/sci-biology/FLASH/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> @@ -6,4 +6,7 @@ <email>mmokrejs@fold.natur.cuni.cz</email> <name>Martin Mokrejs</name> </maintainer> + <upstream> + <remote-id type="sourceforge">flashpage</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-biology/MeV/metadata.xml b/sci-biology/MeV/metadata.xml index 91ee05ecf..ed5534d06 100644 --- a/sci-biology/MeV/metadata.xml +++ b/sci-biology/MeV/metadata.xml @@ -1,8 +1,11 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> -<herd>sci-biology</herd> -<maintainer> - <email>mmokrejs@fold.natur.cuni.cz</email> -</maintainer> + <herd>sci-biology</herd> + <maintainer> + <email>mmokrejs@fold.natur.cuni.cz</email> + </maintainer> + <upstream> + <remote-id type="sourceforge">mev-tm4</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-biology/RSeQC/metadata.xml b/sci-biology/RSeQC/metadata.xml index 2bc893037..1690d4537 100644 --- a/sci-biology/RSeQC/metadata.xml +++ b/sci-biology/RSeQC/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> @@ -6,4 +6,7 @@ <email>mmokrejs@fold.natur.cuni.cz</email> <name>Martin Mokrejs</name> </maintainer> + <upstream> + <remote-id type="sourceforge">rseqc</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-biology/Ray/metadata.xml b/sci-biology/Ray/metadata.xml index 07b525505..583ccc060 100644 --- a/sci-biology/Ray/metadata.xml +++ b/sci-biology/Ray/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> @@ -6,4 +6,7 @@ <email>mmokrejs@fold.natur.cuni.cz</email> <name>Martin Mokrejs</name> </maintainer> + <upstream> + <remote-id type="sourceforge">denovoassembler</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-biology/SolexaQA/metadata.xml b/sci-biology/SolexaQA/metadata.xml index 2bc893037..c7c89f911 100644 --- a/sci-biology/SolexaQA/metadata.xml +++ b/sci-biology/SolexaQA/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> @@ -6,4 +6,7 @@ <email>mmokrejs@fold.natur.cuni.cz</email> <name>Martin Mokrejs</name> </maintainer> + <upstream> + <remote-id type="sourceforge">clview</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-biology/TransDecoder/metadata.xml b/sci-biology/TransDecoder/metadata.xml index 33de46b4c..00208dfbf 100644 --- a/sci-biology/TransDecoder/metadata.xml +++ b/sci-biology/TransDecoder/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> @@ -8,5 +8,6 @@ </maintainer> <upstream> <remote-id type="github">TransDecoder/TransDecoder</remote-id> + <remote-id type="sourceforge">transdecoder</remote-id> </upstream> </pkgmetadata> diff --git a/sci-biology/VarScan/metadata.xml b/sci-biology/VarScan/metadata.xml index 897aa2e6b..d49d2ba4f 100644 --- a/sci-biology/VarScan/metadata.xml +++ b/sci-biology/VarScan/metadata.xml @@ -1,5 +1,8 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci</herd> + <upstream> + <remote-id type="sourceforge">varscan</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-biology/abacas/metadata.xml b/sci-biology/abacas/metadata.xml index 2bc893037..8f79243ce 100644 --- a/sci-biology/abacas/metadata.xml +++ b/sci-biology/abacas/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> @@ -6,4 +6,7 @@ <email>mmokrejs@fold.natur.cuni.cz</email> <name>Martin Mokrejs</name> </maintainer> + <upstream> + <remote-id type="sourceforge">abacas</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-biology/amos/metadata.xml b/sci-biology/amos/metadata.xml index 973202fc7..42cab917a 100644 --- a/sci-biology/amos/metadata.xml +++ b/sci-biology/amos/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> @@ -11,5 +11,8 @@ AMOS is collection of tools and class interfaces for the assembly of DNA sequencing reads. The package includes a robust infrastructure, modular assembly pipelines, and tools for overlapping, consensus generation, contigging, and assembly manipulation -</longdescription> + </longdescription> + <upstream> + <remote-id type="sourceforge">amos</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-biology/bambus/metadata.xml b/sci-biology/bambus/metadata.xml index 8d87f01b2..627fd14ed 100644 --- a/sci-biology/bambus/metadata.xml +++ b/sci-biology/bambus/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> @@ -7,4 +7,7 @@ <name>Martin Mokrejs</name> </maintainer> <longdescription>Bambus is the first general purpose scaffolder that is publicly available as an open source package. While most other scaffolders are closely tied to a specific assembly program, Bambus accepts the output from most current assemblers and provides the user with great flexibility in choosing the scaffolding parameters. In particular, Bambus is able to accept contig linking data other than specified by mate-pairs. Such sources of information include alignment to a reference genome (Bambus can directly use the output of MUMmer), physical mapping data, or information about gene synteny.</longdescription> + <upstream> + <remote-id type="sourceforge">amos</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-biology/clview/metadata.xml b/sci-biology/clview/metadata.xml index 07b525505..393a82878 100644 --- a/sci-biology/clview/metadata.xml +++ b/sci-biology/clview/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> @@ -6,4 +6,7 @@ <email>mmokrejs@fold.natur.cuni.cz</email> <name>Martin Mokrejs</name> </maintainer> + <upstream> + <remote-id type="sourceforge">clview</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-biology/cortex_var/metadata.xml b/sci-biology/cortex_var/metadata.xml index 2bc893037..04da1640c 100644 --- a/sci-biology/cortex_var/metadata.xml +++ b/sci-biology/cortex_var/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> @@ -6,4 +6,7 @@ <email>mmokrejs@fold.natur.cuni.cz</email> <name>Martin Mokrejs</name> </maintainer> + <upstream> + <remote-id type="sourceforge">cortexassembler</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-biology/estscan/metadata.xml b/sci-biology/estscan/metadata.xml index 14aff5c6f..15f280c22 100644 --- a/sci-biology/estscan/metadata.xml +++ b/sci-biology/estscan/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> @@ -12,4 +12,7 @@ <use> <flag name="ifc">Undocumented USE</flag> </use> + <upstream> + <remote-id type="sourceforge">estscan</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-biology/fsa/metadata.xml b/sci-biology/fsa/metadata.xml index 2bc893037..b40b0c2aa 100644 --- a/sci-biology/fsa/metadata.xml +++ b/sci-biology/fsa/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> @@ -6,4 +6,7 @@ <email>mmokrejs@fold.natur.cuni.cz</email> <name>Martin Mokrejs</name> </maintainer> + <upstream> + <remote-id type="sourceforge">fsa</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-biology/gbrowse/metadata.xml b/sci-biology/gbrowse/metadata.xml index 61916cbd7..268d5a048 100644 --- a/sci-biology/gbrowse/metadata.xml +++ b/sci-biology/gbrowse/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer> @@ -9,5 +9,8 @@ <herd>sci-biology</herd> <longdescription lang="en"> GBrowse is a generic genome browser written in perl, could run as CGI, under mod_perl. Something called Apache::Registry should make it faster. It uses mysql or postgres as the storage engine. - </longdescription> + </longdescription> + <upstream> + <remote-id type="sourceforge">gmod</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-biology/genomeview-bin/metadata.xml b/sci-biology/genomeview-bin/metadata.xml index 07b525505..556215900 100644 --- a/sci-biology/genomeview-bin/metadata.xml +++ b/sci-biology/genomeview-bin/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> @@ -6,4 +6,7 @@ <email>mmokrejs@fold.natur.cuni.cz</email> <name>Martin Mokrejs</name> </maintainer> + <upstream> + <remote-id type="sourceforge">genomeview</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-biology/glean/metadata.xml b/sci-biology/glean/metadata.xml index 2bc893037..46b93e26a 100644 --- a/sci-biology/glean/metadata.xml +++ b/sci-biology/glean/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> @@ -6,4 +6,7 @@ <email>mmokrejs@fold.natur.cuni.cz</email> <name>Martin Mokrejs</name> </maintainer> + <upstream> + <remote-id type="sourceforge">glean-gene</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-biology/inGAP-bin/metadata.xml b/sci-biology/inGAP-bin/metadata.xml index 2bc893037..8ed5082cc 100644 --- a/sci-biology/inGAP-bin/metadata.xml +++ b/sci-biology/inGAP-bin/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> @@ -6,4 +6,7 @@ <email>mmokrejs@fold.natur.cuni.cz</email> <name>Martin Mokrejs</name> </maintainer> + <upstream> + <remote-id type="sourceforge">ingap</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-biology/jtreeview/metadata.xml b/sci-biology/jtreeview/metadata.xml index 2bc893037..68e07bd3b 100644 --- a/sci-biology/jtreeview/metadata.xml +++ b/sci-biology/jtreeview/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> @@ -6,4 +6,7 @@ <email>mmokrejs@fold.natur.cuni.cz</email> <name>Martin Mokrejs</name> </maintainer> + <upstream> + <remote-id type="sourceforge">jtreeview</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-biology/lucy/metadata.xml b/sci-biology/lucy/metadata.xml index 07b525505..a69c00c78 100644 --- a/sci-biology/lucy/metadata.xml +++ b/sci-biology/lucy/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> @@ -6,4 +6,7 @@ <email>mmokrejs@fold.natur.cuni.cz</email> <name>Martin Mokrejs</name> </maintainer> + <upstream> + <remote-id type="sourceforge">lucy</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-biology/manatee-igs/metadata.xml b/sci-biology/manatee-igs/metadata.xml index 2bc893037..695de044d 100644 --- a/sci-biology/manatee-igs/metadata.xml +++ b/sci-biology/manatee-igs/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> @@ -6,4 +6,7 @@ <email>mmokrejs@fold.natur.cuni.cz</email> <name>Martin Mokrejs</name> </maintainer> + <upstream> + <remote-id type="sourceforge">manatee</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-biology/manatee-jcvi/metadata.xml b/sci-biology/manatee-jcvi/metadata.xml index 2bc893037..695de044d 100644 --- a/sci-biology/manatee-jcvi/metadata.xml +++ b/sci-biology/manatee-jcvi/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> @@ -6,4 +6,7 @@ <email>mmokrejs@fold.natur.cuni.cz</email> <name>Martin Mokrejs</name> </maintainer> + <upstream> + <remote-id type="sourceforge">manatee</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-biology/parafly/metadata.xml b/sci-biology/parafly/metadata.xml index 2bc893037..d9410a9d6 100644 --- a/sci-biology/parafly/metadata.xml +++ b/sci-biology/parafly/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> @@ -6,4 +6,7 @@ <email>mmokrejs@fold.natur.cuni.cz</email> <name>Martin Mokrejs</name> </maintainer> + <upstream> + <remote-id type="sourceforge">transdecoder</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-biology/samstat/metadata.xml b/sci-biology/samstat/metadata.xml index 2bc893037..2a4a3454d 100644 --- a/sci-biology/samstat/metadata.xml +++ b/sci-biology/samstat/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> @@ -6,4 +6,7 @@ <email>mmokrejs@fold.natur.cuni.cz</email> <name>Martin Mokrejs</name> </maintainer> + <upstream> + <remote-id type="sourceforge">samstat</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-biology/scaffold_builder/metadata.xml b/sci-biology/scaffold_builder/metadata.xml index 2bc893037..01809e9e6 100644 --- a/sci-biology/scaffold_builder/metadata.xml +++ b/sci-biology/scaffold_builder/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> @@ -6,4 +6,7 @@ <email>mmokrejs@fold.natur.cuni.cz</email> <name>Martin Mokrejs</name> </maintainer> + <upstream> + <remote-id type="sourceforge">scaffold-b</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-biology/skewer-bin/metadata.xml b/sci-biology/skewer-bin/metadata.xml index 2bc893037..0c9722d0e 100644 --- a/sci-biology/skewer-bin/metadata.xml +++ b/sci-biology/skewer-bin/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> @@ -6,4 +6,7 @@ <email>mmokrejs@fold.natur.cuni.cz</email> <name>Martin Mokrejs</name> </maintainer> + <upstream> + <remote-id type="sourceforge">skewer</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-biology/staden/metadata.xml b/sci-biology/staden/metadata.xml index 2bc893037..bbb42e1db 100644 --- a/sci-biology/staden/metadata.xml +++ b/sci-biology/staden/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> @@ -6,4 +6,7 @@ <email>mmokrejs@fold.natur.cuni.cz</email> <name>Martin Mokrejs</name> </maintainer> + <upstream> + <remote-id type="sourceforge">staden</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-biology/swissknife/metadata.xml b/sci-biology/swissknife/metadata.xml index f17a827e3..70d333ff0 100644 --- a/sci-biology/swissknife/metadata.xml +++ b/sci-biology/swissknife/metadata.xml @@ -1,5 +1,8 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> + <upstream> + <remote-id type="sourceforge">swissknife</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-biology/tgicl/metadata.xml b/sci-biology/tgicl/metadata.xml index 2bc893037..3a53e90c1 100644 --- a/sci-biology/tgicl/metadata.xml +++ b/sci-biology/tgicl/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> @@ -6,4 +6,7 @@ <email>mmokrejs@fold.natur.cuni.cz</email> <name>Martin Mokrejs</name> </maintainer> + <upstream> + <remote-id type="sourceforge">tgicl</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-biology/trowel/metadata.xml b/sci-biology/trowel/metadata.xml index 2bc893037..48ef8ee4c 100644 --- a/sci-biology/trowel/metadata.xml +++ b/sci-biology/trowel/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> @@ -6,4 +6,7 @@ <email>mmokrejs@fold.natur.cuni.cz</email> <name>Martin Mokrejs</name> </maintainer> + <upstream> + <remote-id type="sourceforge">trowel-ec</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-biology/wgs-assembler/metadata.xml b/sci-biology/wgs-assembler/metadata.xml index f17a827e3..8cc5aa2c9 100644 --- a/sci-biology/wgs-assembler/metadata.xml +++ b/sci-biology/wgs-assembler/metadata.xml @@ -1,5 +1,8 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-biology</herd> + <upstream> + <remote-id type="sourceforge">wgs-assembler</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-chemistry/NMRdyn/metadata.xml b/sci-chemistry/NMRdyn/metadata.xml index c16616633..76043542c 100644 --- a/sci-chemistry/NMRdyn/metadata.xml +++ b/sci-chemistry/NMRdyn/metadata.xml @@ -1,8 +1,11 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer> <email>jlec@gentoo.org</email> <name>Justin Lecher</name> </maintainer> + <upstream> + <remote-id type="sourceforge">nmrdyn</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-chemistry/openbabel-java/metadata.xml b/sci-chemistry/openbabel-java/metadata.xml index 13ecd9d5d..9de1810dd 100644 --- a/sci-chemistry/openbabel-java/metadata.xml +++ b/sci-chemistry/openbabel-java/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> @@ -9,4 +9,7 @@ solid-state materials, biochemistry, or related areas. This package enables to access Open Babel library from Java (Scala, etc.) programs. </longdescription> + <upstream> + <remote-id type="sourceforge">openbabel</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-chemistry/openbabel-perl/metadata.xml b/sci-chemistry/openbabel-perl/metadata.xml index 075056290..c73e211ef 100644 --- a/sci-chemistry/openbabel-perl/metadata.xml +++ b/sci-chemistry/openbabel-perl/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> @@ -9,4 +9,7 @@ solid-state materials, biochemistry, or related areas. This package enables to access Open Babel library from Perl programs. </longdescription> + <upstream> + <remote-id type="sourceforge">openbabel</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-chemistry/openbabel-python/metadata.xml b/sci-chemistry/openbabel-python/metadata.xml index f85780135..66b2cb75c 100644 --- a/sci-chemistry/openbabel-python/metadata.xml +++ b/sci-chemistry/openbabel-python/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> @@ -9,4 +9,7 @@ solid-state materials, biochemistry, or related areas. This package enables to access Open Babel library from Python programs. </longdescription> + <upstream> + <remote-id type="sourceforge">openbabel</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-chemistry/openbabel-ruby/metadata.xml b/sci-chemistry/openbabel-ruby/metadata.xml index e787ba02a..2e486b247 100644 --- a/sci-chemistry/openbabel-ruby/metadata.xml +++ b/sci-chemistry/openbabel-ruby/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> @@ -9,4 +9,7 @@ solid-state materials, biochemistry, or related areas. This package enables to access Open Babel library from Ruby programs. </longdescription> + <upstream> + <remote-id type="sourceforge">openbabel</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-chemistry/openbabel/metadata.xml b/sci-chemistry/openbabel/metadata.xml index e366d5fd9..0e989df8a 100644 --- a/sci-chemistry/openbabel/metadata.xml +++ b/sci-chemistry/openbabel/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> @@ -17,4 +17,7 @@ <flag name="ruby">Install Ruby bindings.</flag> <flag name="wxwidgets">Build Open Babel GUI.</flag> </use> + <upstream> + <remote-id type="sourceforge">openbabel</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-chemistry/pesto/metadata.xml b/sci-chemistry/pesto/metadata.xml index 51fdedab1..03b4d597f 100644 --- a/sci-chemistry/pesto/metadata.xml +++ b/sci-chemistry/pesto/metadata.xml @@ -1,5 +1,8 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> + <upstream> + <remote-id type="sourceforge">pesto</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-chemistry/pymol-apbs-plugin/metadata.xml b/sci-chemistry/pymol-apbs-plugin/metadata.xml index 9ac9ffdb3..3632cfad4 100644 --- a/sci-chemistry/pymol-apbs-plugin/metadata.xml +++ b/sci-chemistry/pymol-apbs-plugin/metadata.xml @@ -1,5 +1,8 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> -<herd>sci-chemistry</herd> + <herd>sci-chemistry</herd> + <upstream> + <remote-id type="sourceforge">pymolapbsplugin</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-chemistry/rosetta-tools/metadata.xml b/sci-chemistry/rosetta-tools/metadata.xml index 51fdedab1..7cdf9dbb2 100644 --- a/sci-chemistry/rosetta-tools/metadata.xml +++ b/sci-chemistry/rosetta-tools/metadata.xml @@ -1,5 +1,8 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> + <upstream> + <remote-id type="sourceforge">dylans-biotools</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-libs/ghmm/metadata.xml b/sci-libs/ghmm/metadata.xml index 970013aea..be6f82522 100644 --- a/sci-libs/ghmm/metadata.xml +++ b/sci-libs/ghmm/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer> @@ -6,4 +6,7 @@ <name>Andrey Kislyuk</name> </maintainer> <herd>sci</herd> + <upstream> + <remote-id type="sourceforge">ghmm</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-libs/libcgnsoo/metadata.xml b/sci-libs/libcgnsoo/metadata.xml index b229aec85..9fd767e5c 100644 --- a/sci-libs/libcgnsoo/metadata.xml +++ b/sci-libs/libcgnsoo/metadata.xml @@ -1,5 +1,8 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> -<herd>sci</herd> + <herd>sci</herd> + <upstream> + <remote-id type="sourceforge">openfoam-extend</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-libs/nipype/metadata.xml b/sci-libs/nipype/metadata.xml index 1f3c091ca..14eea398c 100644 --- a/sci-libs/nipype/metadata.xml +++ b/sci-libs/nipype/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci</herd> @@ -17,5 +17,8 @@ the learning curve necessary to use different packages. Nipype is creating a collaborative platform for neuroimaging software development in a high-level language and addressing limitations of existing pipeline systems. -</longdescription> + </longdescription> + <upstream> + <remote-id type="sourceforge">nipy</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-libs/pydicom/metadata.xml b/sci-libs/pydicom/metadata.xml index 897aa2e6b..00acf16d2 100644 --- a/sci-libs/pydicom/metadata.xml +++ b/sci-libs/pydicom/metadata.xml @@ -1,5 +1,8 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci</herd> + <upstream> + <remote-id type="pypi">pydicom</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-libs/spglib/metadata.xml b/sci-libs/spglib/metadata.xml index fe098fe40..f2e82ed12 100644 --- a/sci-libs/spglib/metadata.xml +++ b/sci-libs/spglib/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer> @@ -9,4 +9,7 @@ <longdescription lang="en"> Spglib is a C library for finding and handling crystal symmetries. </longdescription> + <upstream> + <remote-id type="sourceforge">spglib</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-libs/starparse/metadata.xml b/sci-libs/starparse/metadata.xml index 897aa2e6b..728ed7784 100644 --- a/sci-libs/starparse/metadata.xml +++ b/sci-libs/starparse/metadata.xml @@ -1,5 +1,8 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci</herd> + <upstream> + <remote-id type="sourceforge">burrow-owl</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-libs/vxl/metadata.xml b/sci-libs/vxl/metadata.xml index 1cdbde283..5fdfc5ee9 100644 --- a/sci-libs/vxl/metadata.xml +++ b/sci-libs/vxl/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci</herd> @@ -7,5 +7,8 @@ for computer vision research and implementation. It was created from TargetJr and the IUE with the aim of making a light, fast and consistent system. VXL is written in ANSI/ISO C++ and is designed to be portable over many platforms. -</longdescription> + </longdescription> + <upstream> + <remote-id type="sourceforge">vxl</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-mathematics/mdp/metadata.xml b/sci-mathematics/mdp/metadata.xml index 6e3942855..e9aaf6bdb 100644 --- a/sci-mathematics/mdp/metadata.xml +++ b/sci-mathematics/mdp/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-mathematics</herd> @@ -12,6 +12,9 @@ (PCA), Independent Component Analysis (ICA), Slow Feature Analysis (SFA), Independent Slow Feature Analysis (ISFA), Growing Neural Gas (GNG), Factor Analysis, Fisher Discriminant Analysis (FDA), Gaussian Classifiers, and - Restricted Boltzmann Machines. -</longdescription> + Restricted Boltzmann Machines. + </longdescription> + <upstream> + <remote-id type="sourceforge">mdp-toolkit</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-mathematics/ufc/metadata.xml b/sci-mathematics/ufc/metadata.xml index 497df0887..5a2341911 100644 --- a/sci-mathematics/ufc/metadata.xml +++ b/sci-mathematics/ufc/metadata.xml @@ -1,11 +1,12 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-mathematics</herd> <longdescription lang="en"> UFC (Unified Form-assembly Code) is a unified framework for finite element assembly. More precisely, it defines a fixed interface for communicating low level routines (functions) for evaluating and assembling finite element variational forms. The UFC interface consists of a single header file ufc.h that specifies a C++ interface that must be implemented by code that complies with the UFC specification. -</longdescription> + </longdescription> <upstream> <remote-id type="bitbucket">fenics-project/ufc-deprecated</remote-id> + <remote-id type="launchpad">ufc</remote-id> </upstream> </pkgmetadata> diff --git a/sci-misc/kaldi/metadata.xml b/sci-misc/kaldi/metadata.xml index 9e25ae0bb..e961e5163 100644 --- a/sci-misc/kaldi/metadata.xml +++ b/sci-misc/kaldi/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer> @@ -9,4 +9,7 @@ in C++ and licensed under the Apache License v2.0. Kaldi is intended for use by speech recognition researchers. </longdescription> + <upstream> + <remote-id type="sourceforge">kaldi</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-misc/praat/metadata.xml b/sci-misc/praat/metadata.xml index 7bd7ae0d3..eba36094a 100644 --- a/sci-misc/praat/metadata.xml +++ b/sci-misc/praat/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer> @@ -7,5 +7,8 @@ <longdescription lang="en"> Praat is a phonetic program for computer. It includes speech synthesis, analysis and other tools. -</longdescription> + </longdescription> + <upstream> + <remote-id type="github">praat/praat</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-physics/genfit/metadata.xml b/sci-physics/genfit/metadata.xml index 5fae1b626..5534919a6 100644 --- a/sci-physics/genfit/metadata.xml +++ b/sci-physics/genfit/metadata.xml @@ -1,8 +1,8 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> -<herd>sci-physics</herd> -<longdescription lang="en"> + <herd>sci-physics</herd> + <longdescription lang="en"> GENFIT is an experiment-independent framework for track reconstruction for particle and nuclear physics. It consists of three modular components: - Track fitting algorithms @@ -26,6 +26,9 @@ detector hits in a transparent way without any geometrical simplifications. GENFIT has been developed in the framework of the PANDA experiment at FAIR, Darmstadt, Germany. - It is also used in the Belle-2, Fopi, and GEM-TPC experiments. -</longdescription> + It is also used in the Belle-2, Fopi, and GEM-TPC experiments. + </longdescription> + <upstream> + <remote-id type="sourceforge">genfit</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-visualization/nodemon/metadata.xml b/sci-visualization/nodemon/metadata.xml index 317855c68..9647ad418 100644 --- a/sci-visualization/nodemon/metadata.xml +++ b/sci-visualization/nodemon/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci</herd> @@ -10,8 +10,11 @@ NodeMon is a distributed visualization tool for monitoring system resource utilization. It is primarily intended for clusters and large-scale NUMA systems. -</longdescription> + </longdescription> <use> <flag name="pbs">Enable support for the Portable Batch System.</flag> </use> + <upstream> + <remote-id type="sourceforge">nodemon</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-visualization/vtkPOFFReader/metadata.xml b/sci-visualization/vtkPOFFReader/metadata.xml index 334411aca..a0fda9b3f 100644 --- a/sci-visualization/vtkPOFFReader/metadata.xml +++ b/sci-visualization/vtkPOFFReader/metadata.xml @@ -1,7 +1,10 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci</herd> <use> </use> + <upstream> + <remote-id type="sourceforge">of-interfaces</remote-id> + </upstream> </pkgmetadata> diff --git a/sys-cluster/modules/metadata.xml b/sys-cluster/modules/metadata.xml index 2ccddf5af..4405dc372 100644 --- a/sys-cluster/modules/metadata.xml +++ b/sys-cluster/modules/metadata.xml @@ -1,4 +1,4 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>cluster</herd> @@ -12,5 +12,8 @@ typically instruct the module command to alter or set shell environment variables such as PATH, MANPATH, etc. as well as define aliases over a variety of shells. -</longdescription> + </longdescription> + <upstream> + <remote-id type="sourceforge">modules</remote-id> + </upstream> </pkgmetadata> diff --git a/sys-cluster/pyslice/metadata.xml b/sys-cluster/pyslice/metadata.xml index d2d79a4da..042d5e885 100644 --- a/sys-cluster/pyslice/metadata.xml +++ b/sys-cluster/pyslice/metadata.xml @@ -1,11 +1,12 @@ -<?xml version="1.0" encoding="UTF-8"?> +<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>cluster</herd> <longdescription> Templating system for parametric modeling. -</longdescription> + </longdescription> <upstream> <remote-id type="pypi">pyslice</remote-id> + <remote-id type="sourceforge">pyslice</remote-id> </upstream> </pkgmetadata> |