1 files changed, 45 insertions, 0 deletions
diff --git a/sci-biology/Trinotate/Trinotate-3.2.1.ebuild b/sci-biology/Trinotate/Trinotate-3.2.1.ebuild
new file mode 100644
index 000000000..85807d4a0
--- /dev/null
+++ b/sci-biology/Trinotate/Trinotate-3.2.1.ebuild
@@ -0,0 +1,45 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit perl-module toolchain-funcs
+
+DESCRIPTION="Annotation and analysis pipeline for de novo assembled transcriptomes"
+HOMEPAGE="https://github.com/Trinotate/Trinotate.github.io/wiki"
+SRC_URI="https://github.com/Trinotate/Trinotate/archive/${PN}-v${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="BSD-BroadInstitute"
+SLOT="0"
+KEYWORDS=""
+
+DEPEND=""
+RDEPEND="${DEPEND}
+	sci-biology/ncbi-tools++
+	sci-biology/trinityrnaseq
+	sci-biology/TransDecoder
+"
+
+# http://www.cbs.dtu.dk/cgi-bin/sw_request?rnammer
+# >=sci-biology/rnammer-2.3.2
+#
+# http://www.cbs.dtu.dk/cgi-bin/nph-sw_request?signalp
+# >=sci-biology/signalp-4
+#
+# http://www.cbs.dtu.dk/cgi-bin/nph-sw_request?tmhmm
+
+# We suggest you rename this version of hmmsearch from hmmer-2 package to 'hmmsearch2'.
+# In the 'rnammer' software configuration, edit the rnammer script to point
+# $HMMSEARCH_BINARY = "/path/to/hmmsearch2";
+
+S="${WORKDIR}/${PN}-${PN}-v${PV}"
+
+src_install(){
+	perl_set_version
+	dobin Trinotate
+	insinto /usr/share/"${PN}"
+	doins -r admin sample_data util TrinotateWeb
+	insinto ${VENDOR_LIB}/${PN}
+	doins -r PerlLib/*
+	dodoc notes README.md README.txt Changelog.txt
+}