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Diffstat (limited to 'sci-biology/ampliconnoise/ampliconnoise-1.27.ebuild')
| -rw-r--r-- | sci-biology/ampliconnoise/ampliconnoise-1.27.ebuild | 43 |
1 files changed, 0 insertions, 43 deletions
diff --git a/sci-biology/ampliconnoise/ampliconnoise-1.27.ebuild b/sci-biology/ampliconnoise/ampliconnoise-1.27.ebuild deleted file mode 100644 index 5555cf4c6..000000000 --- a/sci-biology/ampliconnoise/ampliconnoise-1.27.ebuild +++ /dev/null @@ -1,43 +0,0 @@ -# Copyright 1999-2016 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -DESCRIPTION="Noise removal from pyrosequenced amplicons" -HOMEPAGE="http://code.google.com/p/ampliconnoise/" -SRC_URI=" - http://ampliconnoise.googlecode.com/files/AmpliconNoiseV${PV}.tar.gz - http://ampliconnoise.googlecode.com/files/TutorialV1.22.tar.gz - http://ampliconnoise.googlecode.com/files/DiversityEstimates.tar.gz" - -LICENSE="LGPL-3" -SLOT="0" -KEYWORDS="" -IUSE="mpi" -RDEPEND=" - mpi? ( virtual/mpi ) - sci-libs/gsl - sci-biology/mafft - sci-biology/usearch-bin - dev-haskell/biosff || ( sci-biology/flower )" - # sci-biology/flower::haskell installs renamed binaries to avoid file collision - # unfortunately flower executable from the two packages - # dev-haskell/biosff::science vs. sci-biology/flower::haskell - # do not offer same cmdline options (upstream did not sync the two packages) - -S="${WORKDIR}/AmpliconNoiseV1.27" - -src_compile(){ - # FIXME: the Makefile forcibly calls 'mpicc' - emake - cd ../DiversityEstimates || die - emake -} - -src_install(){ - default - dodoc "${WORKDIR}"/TutorialV1.22/Tutorial.ppt "${WORKDIR}"/TutorialV1.22/SmallTwins.* Doc.pdf - mv bin "${DESTDIR}/${EPREFIX}"/usr/ || die - insinto /usr/share/"${PN}"/scripts - doins Scripts/*.pl Scripts/*.sh -} |