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Diffstat (limited to 'sci-biology/germline/germline-1.5.1.ebuild')
-rw-r--r-- | sci-biology/germline/germline-1.5.1.ebuild | 35 |
1 files changed, 35 insertions, 0 deletions
diff --git a/sci-biology/germline/germline-1.5.1.ebuild b/sci-biology/germline/germline-1.5.1.ebuild new file mode 100644 index 000000000..e2402fcbe --- /dev/null +++ b/sci-biology/germline/germline-1.5.1.ebuild @@ -0,0 +1,35 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +inherit versionator toolchain-funcs + +MY_PV=$(replace_all_version_separators '-') + +DESCRIPTION="Find shared segments of Identity by Descent (IBD) between pairs of individuals" +HOMEPAGE="http://www.cs.columbia.edu/~gusev/germline + http://genome.cshlp.org/content/19/2/318.full" +SRC_URI="http://www.cs.columbia.edu/~gusev/${PN}/${PN}-${MY_PV}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +DEPEND="dev-libs/boost" +RDEPEND="${DEPEND}" + +S="${WORKDIR}"/${PN}-${MY_PV} + +src_prepare(){ + sed -e "s/-O3 /${CXXFLAGS} /;s/g++/$(tc-getCXX)/" -i Makefile || die + sed -e "s#diff -q -s test/expected.match test/generated.match#diff -q -s test/expected.match test/generated.match || cat test/generated.err#" -i Makefile || die + sed -e "s/^all: clean germline bmatch test/all: clean germline bmatch/" -i Makefile || die + default +} + +src_install(){ + dobin germline parse_bmatch +} |