diff options
Diffstat (limited to 'sci-biology/phrap')
| -rw-r--r-- | sci-biology/phrap/ChangeLog | 12 | ||||
| -rw-r--r-- | sci-biology/phrap/Manifest | 16 | ||||
| -rw-r--r-- | sci-biology/phrap/files/digest-phrap-0.990329 | 3 | ||||
| -rw-r--r-- | sci-biology/phrap/metadata.xml | 5 | ||||
| -rw-r--r-- | sci-biology/phrap/phrap-0.990329.ebuild | 38 |
5 files changed, 0 insertions, 74 deletions
diff --git a/sci-biology/phrap/ChangeLog b/sci-biology/phrap/ChangeLog deleted file mode 100644 index ad24df867..000000000 --- a/sci-biology/phrap/ChangeLog +++ /dev/null @@ -1,12 +0,0 @@ -# ChangeLog for sci-biology/phrap -# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2 -# $Header: $ - - 27 Apr 2007; Andrey Kislyuk <weaver@horizon.ath.cx> - +phrap-0.990329.ebuild: - Mass import from sunrise - - 20 Apr 2007; Andrey Kislyuk <weaver@horizon.ath.cx> +phrap-0.990329.ebuild, - +metadata.xml: - new package (bug 114094) - diff --git a/sci-biology/phrap/Manifest b/sci-biology/phrap/Manifest deleted file mode 100644 index b91e36473..000000000 --- a/sci-biology/phrap/Manifest +++ /dev/null @@ -1,16 +0,0 @@ -DIST phrap-distrib.tar.Z 366163 RMD160 f6d15059903868b907df225b9022b47957f4004a SHA1 69d9343d1d3bc7edcab2ebca222370fc9db7b9f7 SHA256 e0be79818e3a8ca17391f42cc0ffbaf1a63299c8845a0b9ac3aaeb3cac641fcc -EBUILD phrap-0.990329.ebuild 864 RMD160 8b68c2d90e42141a40be209940becdaa49905a86 SHA1 2d932bf847b0caf4b29bdd070a3b45bf6667b59d SHA256 4a45b1a66fee1b89b5ef05ab43e64302092c84fba3860459a4224fd7ed92c51b -MD5 4a1adcef5c69fe9cbf938427605a9a15 phrap-0.990329.ebuild 864 -RMD160 8b68c2d90e42141a40be209940becdaa49905a86 phrap-0.990329.ebuild 864 -SHA256 4a45b1a66fee1b89b5ef05ab43e64302092c84fba3860459a4224fd7ed92c51b phrap-0.990329.ebuild 864 -MISC ChangeLog 349 RMD160 df3f1863d3b262b9e132f56cca3ef29c32abec3a SHA1 fab185ba0db30f7e38348a51c320e18a07bfd3c5 SHA256 7f9bdafcf31c81b9645bbbe686713674401db183400afc50fe7645e362a0b0e6 -MD5 fe91acfe41cdb2b1bf6c9cda15f70023 ChangeLog 349 -RMD160 df3f1863d3b262b9e132f56cca3ef29c32abec3a ChangeLog 349 -SHA256 7f9bdafcf31c81b9645bbbe686713674401db183400afc50fe7645e362a0b0e6 ChangeLog 349 -MISC metadata.xml 170 RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 SHA1 ac7f48a14fec325926f9ce1be8fbf1f311b4f2e4 SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42 -MD5 1e678929a9fec6632e227bdf2262e9a1 metadata.xml 170 -RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 metadata.xml 170 -SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42 metadata.xml 170 -MD5 ff974aab20ef25dcbd88133eb69a3050 files/digest-phrap-0.990329 238 -RMD160 0b184a131052786397b0ba8d5d426290710b4b6b files/digest-phrap-0.990329 238 -SHA256 f6fe89aa7f79d89a054545bbd328c858d58f0df88fae08af5873f6c58480b699 files/digest-phrap-0.990329 238 diff --git a/sci-biology/phrap/files/digest-phrap-0.990329 b/sci-biology/phrap/files/digest-phrap-0.990329 deleted file mode 100644 index 20d49a807..000000000 --- a/sci-biology/phrap/files/digest-phrap-0.990329 +++ /dev/null @@ -1,3 +0,0 @@ -MD5 35175595801cafd22ec348fb9dba0ce4 phrap-distrib.tar.Z 366163 -RMD160 f6d15059903868b907df225b9022b47957f4004a phrap-distrib.tar.Z 366163 -SHA256 e0be79818e3a8ca17391f42cc0ffbaf1a63299c8845a0b9ac3aaeb3cac641fcc phrap-distrib.tar.Z 366163 diff --git a/sci-biology/phrap/metadata.xml b/sci-biology/phrap/metadata.xml deleted file mode 100644 index 7e3286984..000000000 --- a/sci-biology/phrap/metadata.xml +++ /dev/null @@ -1,5 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> -<herd>maintainer-wanted</herd> -</pkgmetadata> diff --git a/sci-biology/phrap/phrap-0.990329.ebuild b/sci-biology/phrap/phrap-0.990329.ebuild deleted file mode 100644 index 06cffa641..000000000 --- a/sci-biology/phrap/phrap-0.990329.ebuild +++ /dev/null @@ -1,38 +0,0 @@ -# Copyright 1999-2007 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: $ - -DESCRIPTION="Phrap, swat, cross_match: Shotgun assembly and alignment utilities" -HOMEPAGE="http://www.phrap.org/" -SRC_URI="phrap-distrib.tar.Z" - -LICENSE="phrap" -SLOT="0" -KEYWORDS="~x86" -IUSE="" - -DEPEND="" -RDEPEND="" - -S="${WORKDIR}" - -RESTRICT="fetch" - -pkg_nofetch() { - einfo "Please visit http://www.phrap.org/phredphrapconsed.html and obtain the file" - einfo '"distrib.tar.Z", then rename it to "phrap-distrib.tar.Z" and put it in' - einfo "${DISTDIR}" -} - -src_compile() { - sed -i 's/CFLAGS=/#CFLAGS=/' makefile - sed -i 's|#!/usr/local/bin/perl|#!/usr/bin/perl|' phrapview - emake || die "emake failed" -} - -src_install() { - dobin cluster cross_match loco phrap phrapview swat - for i in {general,phrap,swat}.doc ; do - newdoc ${i} ${i}.txt - done -} |