diff options
Diffstat (limited to 'sci-biology/samri/samri-9999.ebuild')
| -rw-r--r-- | sci-biology/samri/samri-9999.ebuild | 18 |
1 files changed, 14 insertions, 4 deletions
diff --git a/sci-biology/samri/samri-9999.ebuild b/sci-biology/samri/samri-9999.ebuild index 4f2c64bc7..8a6bc65ae 100644 --- a/sci-biology/samri/samri-9999.ebuild +++ b/sci-biology/samri/samri-9999.ebuild @@ -5,7 +5,7 @@ EAPI=7 PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} ) -inherit distutils-r1 git-r3 +inherit distutils-r1 git-r3 prefix DESCRIPTION="Small Animal Magnetic Resonance Imaging" HOMEPAGE="https://github.com/IBT-FMI/SAMRI" @@ -50,14 +50,24 @@ RDEPEND=" REQUIRED_USE="test? ( atlases )" +src_prepare() { + distutils-r1_src_prepare + sed -i -e "s:/usr:@GENTOO_PORTAGE_EPREFIX@/usr:g" `grep -rlI \'/usr/ *` + sed -i -e "s:/usr:@GENTOO_PORTAGE_EPREFIX@/usr:g" `grep -rlI \"/usr/ *` + sed -i -e "s:/usr:@GENTOO_PORTAGE_EPREFIX@/usr:g" `grep -rlI /usr/ test_scripts.sh` + eprefixify $(grep -rl GENTOO_PORTAGE_EPREFIX samri/* test_scripts.sh) +} + python_test() { distutils_install_for_testing export MPLBACKEND="agg" export PATH=${TEST_DIR}/scripts:$PATH export PYTHONIOENCODING=utf-8 ./test_scripts.sh || die "Test scripts failed." - sed -i -e \ - "/def test_bru2bids():/i@pytest.mark.skip('Removed in full test suite, as this is already tested in `test_scripts.sh`')" \ - samri/pipelines/tests/test_repos.py || die + sed -i \ + -e '1s/^/import pytest \n/' \ + -e "/def test_bru2bids():/i@pytest.mark.skip('Skipped by Portage, as this was already tested in test_scripts.sh')" \ + samri/pipelines/tests/test_reposit.py || die + cd "${BUILD_DIR}" || die pytest -vv || die } |