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# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
inherit perl-module
DESCRIPTION="Predict proteins from EST sequences overcoming frameshifts"
HOMEPAGE="http://www.compsysbio.org/lab/?q=prot4EST
http://www.biomedcentral.com/1471-2105/5/187"
SRC_URI="http://www.compsysbio.org/lab/james/prot4EST_rl3.1b.tgz"
LICENSE="GPL-1"
SLOT="0"
KEYWORDS=""
IUSE=""
DEPEND="sci-biology/emboss
sci-biology/estscan
sci-biology/bioperl
sci-biology/ncbi-tools
virtual/perl-File-Path
virtual/perl-Getopt-Long
dev-perl/Statistics-Descriptive
dev-perl/Tie-IxHash
dev-perl/Algorithm-Loops"
# sci-biology/DECODER
RDEPEND="${DEPEND}"
S="${WORKDIR}"/"p4e3.1b"
src_install(){
mydoc="README INSTALL"
perl-module_src_install
mv bin/prot4EST*.pl bin/prot4EST.pl
dobin bin/*.pl
dodoc doc/*
}
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