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# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
inherit cmake
DESCRIPTION="Transcript-level quantification from RNA-seq reads using lightweight alignments"
HOMEPAGE="https://github.com/COMBINE-lab/salmon"
SRC_URI="https://github.com/COMBINE-lab/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz"
LICENSE="GPL-3"
SLOT="0"
KEYWORDS=""
RDEPEND="
dev-libs/boost:=[threads]
sys-libs/zlib
"
DEPEND="${RDEPEND}
app-arch/bzip2
app-arch/xz-utils
>=dev-libs/jemalloc-5.0.1
>=dev-cpp/tbb-2018.20180312
sci-biology/pufferfish
dev-libs/cereal
"
BDEPEND="
app-arch/unzip
net-misc/curl
"
PATCHES=(
"${FILESDIR}/${P}-do-not-fetch-pufferfish.patch"
"${FILESDIR}/${P}-allow-newer-boost.patch"
)
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