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Diffstat (limited to 'sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild')
| -rw-r--r-- | sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild | 45 |
1 files changed, 45 insertions, 0 deletions
diff --git a/sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild b/sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild new file mode 100644 index 000000000..5a81f47b0 --- /dev/null +++ b/sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild @@ -0,0 +1,45 @@ +# Copyright 1999-2007 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +MY_P=GlimmerHMM + +DESCRIPTION="A eukaryotic gene finding system from TIGR" +HOMEPAGE="http://www.cbcb.umd.edu/software/GlimmerHMM/" +SRC_URI="ftp://ftp.cbcb.umd.edu/pub/software/glimmerhmm/${MY_P}-${PV}.tar.gz" + +LICENSE="Artistic" +SLOT="0" +IUSE="" +KEYWORDS="~x86" + +DEPEND="" +RDEPEND="" + +S=${WORKDIR}/${MY_P} + +src_compile() { + sed -i -e 's|\(my $scriptdir=\)$FindBin::Bin|\1"/usr/share/'${PN}'/training_utils"|' \ + -e 's|\(use lib\) $FindBin::Bin|\1 "/usr/share/'${PN}'/lib"|' train/trainGlimmerHMM || die "sed failed" + sed -i 's/^CFLAGS[ ]*=.*//' */makefile + + cd sources + emake || die "emake failed in sources" + cd "${S}/train" || die "failed to cd" + emake || die "emake failed in train" +} + +src_install() { + dobin sources/glimmerhmm train/trainGlimmerHMM + + dodir /usr/share/${PN}/{lib,models,training_utils} + insinto /usr/share/${PN}/lib + doins train/*.pm + insinto /usr/share/${PN}/models + doins -r trained_dir/* + insinto /usr/share/${PN}/training_utils + insopts -m755 + doins train/{build{1,2,-icm,-icm-noframe},erfapp,falsecomp,findsites,karlin,score,score{2,ATG,ATG2,STOP,STOP2},splicescore} + + dodoc README.first train/readme.train +} |