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author | Michał Górny <mgorny@gentoo.org> | 2024-04-11 05:15:55 +0200 |
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committer | Michał Górny <mgorny@gentoo.org> | 2024-04-11 06:20:01 +0200 |
commit | 177fac774c00bde8524d9a0145bfcdd48a160710 (patch) | |
tree | 963c24cdae9ea8a2bcdf8fa97d23bf2cb8e3cf27 | |
parent | app-admin/awscli: Bump to 1.32.82 (diff) | |
download | gentoo-177fac774c00bde8524d9a0145bfcdd48a160710.tar.gz gentoo-177fac774c00bde8524d9a0145bfcdd48a160710.tar.bz2 gentoo-177fac774c00bde8524d9a0145bfcdd48a160710.zip |
dev-python/scikit-image: Bump to 0.23.1
Signed-off-by: Michał Górny <mgorny@gentoo.org>
-rw-r--r-- | dev-python/scikit-image/Manifest | 1 | ||||
-rw-r--r-- | dev-python/scikit-image/scikit-image-0.23.1.ebuild | 97 |
2 files changed, 98 insertions, 0 deletions
diff --git a/dev-python/scikit-image/Manifest b/dev-python/scikit-image/Manifest index ecdbdaba9105..19374f7c05eb 100644 --- a/dev-python/scikit-image/Manifest +++ b/dev-python/scikit-image/Manifest @@ -1,3 +1,4 @@ DIST scikit-image-data-15735b54e85c02427f07c71e6456723495034805.tar.bz2 143900901 BLAKE2B c1352e76337250fe1a9d6e07f08b6c9b1e0aed922ab8e0a3a4a1ea175f593b3375522e59550d30a22d392c34fef26d638c007c2af3d991887e02e7c68e56ebbb SHA512 d113dd258b35be710d841f9900cfbfe7103d1190b042489de88dd504b56277edac9a98fed5517e57725c5292fe26528267a06ff313bf6500b669d872c4481146 DIST scikit_image-0.22.0.tar.gz 22685018 BLAKE2B 7d0a65f75f5a58211e21501d6cc6a638f1d36e9a2198a3ad9ff2f230890496c41d5e6cdaed02bbaa62f26aa57fd24fc993656cbdfc2c9c9750147d0f325e56f1 SHA512 4b8c097cd5465f57b1c0879363fe3bdc0941decf2d1f8a881f13f2b7f3207c425f3a0cdcb4be0eed7b33d3ac2f3f8b1835d1cfa69cd3fa2ff5e0be11385fef48 DIST scikit_image-0.23.0rc2.tar.gz 22677632 BLAKE2B b663065650e25a33ffec80ddd05df622bc62b1c1d3d0a831488d4dd23291b4f125458ae335782762b1d4dc1efa8cbedd5fcd7e6bbe62003967209e4ca4179bca SHA512 aa5f27d571ea49276aba8443a691b30a576d52145a17f13b8ea080a2abf0ed01c57fe50324c05e72bb4662a9ddbb480be94be6784ac3220ed6853b12d94ae06b +DIST scikit_image-0.23.1.tar.gz 22676819 BLAKE2B 2d02bab4f8d6217c842f428a6758d467393a73a05ac741a49cd27fa6ee48335cf8fed4cc104296388d0e23c61ac3603f72d7bab44986c0d3d4073da383f89726 SHA512 7450387c3adcac15148c3ae4f43fd7da97ceabf3522302b7f3ab4cd02e5a9ec2cd9623f29e4aec3bb47668a231e0900724804619bb91aaaf97283d29c34392e6 diff --git a/dev-python/scikit-image/scikit-image-0.23.1.ebuild b/dev-python/scikit-image/scikit-image-0.23.1.ebuild new file mode 100644 index 000000000000..cb08918d42e9 --- /dev/null +++ b/dev-python/scikit-image/scikit-image-0.23.1.ebuild @@ -0,0 +1,97 @@ +# Copyright 1999-2024 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +DISTUTILS_USE_PEP517=meson-python +DISTUTILS_EXT=1 +PYTHON_COMPAT=( python3_{10..12} ) + +inherit distutils-r1 optfeature pypi + +TEST_DATA_COMMIT=15735b54e85c02427f07c71e6456723495034805 +DESCRIPTION="Image processing routines for SciPy" +HOMEPAGE=" + https://scikit-image.org/ + https://github.com/scikit-image/scikit-image/ + https://pypi.org/project/scikit-image/ +" +SRC_URI+=" + test? ( + https://gitlab.com/scikit-image/data/-/archive/${TEST_DATA_COMMIT}/scikit-image-data-${TEST_DATA_COMMIT}.tar.bz2 + ) +" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~arm64 ~x86" + +RDEPEND=" + >=dev-python/imageio-2.33[${PYTHON_USEDEP}] + >=dev-python/lazy-loader-0.4[${PYTHON_USEDEP}] + >=dev-python/networkx-2.8[${PYTHON_USEDEP}] + >=dev-python/numpy-1.23[${PYTHON_USEDEP}] + >=dev-python/pillow-9.1[${PYTHON_USEDEP}] + >=dev-python/scipy-1.9[sparse(+),${PYTHON_USEDEP}] + >=dev-python/tifffile-2022.8.12[${PYTHON_USEDEP}] +" +DEPEND="${RDEPEND}" +BDEPEND=" + >=dev-python/cython-3.0.4[${PYTHON_USEDEP}] + dev-python/packaging[${PYTHON_USEDEP}] + test? ( + dev-python/pytest-localserver[${PYTHON_USEDEP}] + ) +" + +DOCS=( CONTRIBUTORS.txt RELEASE.txt ) + +# xdist does not work with this test suite +distutils_enable_tests pytest +# There is a programmable error in your configuration file: +#distutils_enable_sphinx doc/source dev-python/numpydoc dev-python/myst-parser + +src_test() { + # for some reason, upstream refetches data that's already in the tarball + # sigh + mkdir -p "${HOME}/.cache/scikit-image" || die + mv skimage "${HOME}/.cache/scikit-image/${PV/_/}" || die + + # This is a true horror, sigh + local cache_dir=${HOME}/.cache/scikit-image/${PV/_/}/data + pushd "${WORKDIR}/data-${TEST_DATA_COMMIT}" >/dev/null || die + cp Tests_besides_Equalize_Otsu/add18_entropy/rank_filters_tests_3d.npz \ + Tests_besides_Equalize_Otsu/gray_morph_output.npz \ + brain.tiff cells3d.tif eagle.png \ + "${cache_dir}/" || die + cp Normal_Epidermis_and_Dermis_with_Intradermal_Nevus_10x.JPG "${cache_dir}"/skin.jpg || die + cp pivchallenge/B/B001_1.tif "${cache_dir}"/pivchallenge-B-B001_1.tif || die + cp pivchallenge/B/B001_2.tif "${cache_dir}"/pivchallenge-B-B001_2.tif || die + cp kidney-tissue-fluorescence.tif "${cache_dir}"/kidney.tif || die + cp lily-of-the-valley-fluorescence.tif "${cache_dir}"/lily.tif || die + cp astronaut_rl.npy "${cache_dir}/../restoration/tests/" || die + popd > /dev/null || die + + distutils-r1_src_test +} + +python_test() { + local EPYTEST_DESELECT=( + # tests for downloading all data files, including these not needed + # by any actual tests + data/tests/test_data.py::test_download_all_with_pooch + ) + + local -x PYTEST_DISABLE_PLUGIN_AUTOLOAD=1 + epytest --pyargs skimage -p localserver -o xfail_strict=False +} + +pkg_postinst() { + optfeature "FITS io capability" dev-python/astropy + optfeature "GTK" dev-python/pygtk + optfeature "Parallel computation" dev-python/dask + optfeature "io plugin providing most standard formats" dev-python/imread + optfeature "plotting" dev-python/matplotlib + optfeature "wavelet transformations" dev-python/pywavelets + optfeature "io plugin providing a wide variety of formats, including specialized formats using in medical imaging." dev-python/simpleitk +} |