diff options
| author |   David Seifert <soap@gentoo.org> | 2016-09-21 23:18:29 +0200 |
|---|---|---|
| committer | David Seifert <soap@gentoo.org> | 2016-09-22 09:29:27 +0200 |
| commit | 32ec7cd438905d9c6f49d8ad16cfcc88d852e731 (patch) | |
| tree | 31726c76aba9dd4592cec3a37cb74f06152e48a5 | |
| parent | dev-ruby/sanitize: add 4.3.0 (diff) | |
| download | gentoo-32ec7cd4.tar.gz gentoo-32ec7cd4.tar.bz2 gentoo-32ec7cd4.zip | |
sci-biology/tophat: Allow for compiling with GCC 6
Gentoo-bug: 594544
Package-Manager: portage-2.3.1
| -rw-r--r-- | sci-biology/tophat/files/tophat-2.1.1-fix-c++14.patch | 14 | ||||
| -rw-r--r-- | sci-biology/tophat/tophat-2.1.1-r1.ebuild | 1 |
2 files changed, 15 insertions, 0 deletions
diff --git a/sci-biology/tophat/files/tophat-2.1.1-fix-c++14.patch b/sci-biology/tophat/files/tophat-2.1.1-fix-c++14.patch new file mode 100644 index 000000000000..e8168bb91438 --- /dev/null +++ b/sci-biology/tophat/files/tophat-2.1.1-fix-c++14.patch @@ -0,0 +1,14 @@ +Fix building with C++14, which errors out due to broken perfect forwarding signature. +See also: https://bugs.gentoo.org/show_bug.cgi?id=594544 + +--- a/src/tophat_reports.cpp ++++ b/src/tophat_reports.cpp +@@ -2705,7 +2705,7 @@ + junction_stat.gtf_match = true; + junction_stat.accepted = true; + +- gtf_junctions.insert(make_pair<Junction, JunctionStats>(Junction(ref_id, left_coord, right_coord, antisense), junction_stat)); ++ gtf_junctions.insert(make_pair(Junction(ref_id, left_coord, right_coord, antisense), junction_stat)); + } + } + fprintf(stderr, "Loaded %d GFF junctions from %s.\n", (int)(gtf_junctions.size()), gtf_juncs.c_str()); diff --git a/sci-biology/tophat/tophat-2.1.1-r1.ebuild b/sci-biology/tophat/tophat-2.1.1-r1.ebuild index a8501758f5d9..6c6690a7a86e 100644 --- a/sci-biology/tophat/tophat-2.1.1-r1.ebuild +++ b/sci-biology/tophat/tophat-2.1.1-r1.ebuild @@ -28,6 +28,7 @@ DEPEND="${RDEPEND} PATCHES=( "${FILESDIR}/${P}-unbundle-seqan-samtools.patch" + "${FILESDIR}/${P}-fix-c++14.patch" ) src_prepare() { |