summaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorDavid Seifert <soap@gentoo.org>2021-10-11 16:55:11 +0200
committerDavid Seifert <soap@gentoo.org>2021-10-11 16:55:11 +0200
commitfac85a0681906115f21e878305e44c0243e0c686 (patch)
tree0fdb690859ceb84721814ffd9e9b011b21bb22e2
parentsci-biology/samtools: drop 1.10-r1 (diff)
downloadgentoo-fac85a0681906115f21e878305e44c0243e0c686.tar.gz
gentoo-fac85a0681906115f21e878305e44c0243e0c686.tar.bz2
gentoo-fac85a0681906115f21e878305e44c0243e0c686.zip
sci-libs/htslib: drop 1.10.2
Bug: https://bugs.gentoo.org/799788 Signed-off-by: David Seifert <soap@gentoo.org> Closes: https://github.com/gentoo/gentoo/pull/22556 Signed-off-by: David Seifert <soap@gentoo.org>
-rw-r--r--sci-libs/htslib/Manifest1
-rw-r--r--sci-libs/htslib/htslib-1.10.2.ebuild51
2 files changed, 0 insertions, 52 deletions
diff --git a/sci-libs/htslib/Manifest b/sci-libs/htslib/Manifest
index 9e65f247fdf..230f4325182 100644
--- a/sci-libs/htslib/Manifest
+++ b/sci-libs/htslib/Manifest
@@ -1,2 +1 @@
-DIST htslib-1.10.2.tar.bz2 1306320 BLAKE2B f877bd9c160921f498f4160f687094a1a369732bc9f61cd94a3c9ca311fa9f865505a205e38e0d348a1010b627f1ef07b590cd7e69c945df1d804133b17b2fd1 SHA512 3ecb83b0abccf731cd42b889e352e10dd922524f6e78bcafb04f8c6c71457b0dc1f5f22690b36f03cce7d97a6a905db286243ef4858138068dcac368e4ae1075
DIST htslib-1.13.tar.bz2 4226834 BLAKE2B ae1f64e564f0f7bea80ea9d276b5d5b2b04fa3c8bd58f2c68966225b4324962f34d8a26b74267ab90dc530dfced1b9c01702d25918fd7a7c74e13913f00d5007 SHA512 16a3d61c115b71406bc4411a0c1176909166b52c4f7bb11614e398df4defaec4d09763413053e4d0d5916921c866d20019096d8fed866e77f9f1cafbd1e95b16
diff --git a/sci-libs/htslib/htslib-1.10.2.ebuild b/sci-libs/htslib/htslib-1.10.2.ebuild
deleted file mode 100644
index 67a341be70e..00000000000
--- a/sci-libs/htslib/htslib-1.10.2.ebuild
+++ /dev/null
@@ -1,51 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit toolchain-funcs
-
-DESCRIPTION="C library for high-throughput sequencing data formats"
-HOMEPAGE="http://www.htslib.org/"
-SRC_URI="mirror://sourceforge/samtools/${PV}/${P}.tar.bz2"
-
-LICENSE="MIT"
-SLOT="0/3"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="+bzip2 curl +lzma"
-
-RDEPEND="
- bzip2? ( app-arch/bzip2:= )
- curl? ( net-misc/curl )
- lzma? ( app-arch/xz-utils:= )"
-DEPEND="${RDEPEND}"
-
-src_prepare() {
- default
-
- # upstream injects LDFLAGS into the .pc file,
- # which is a big nono for QA
- sed -e '/^\(static_l\|Libs.private\|Requires.private\)/d' \
- -i htslib.pc.in || die
-}
-
-src_configure() {
- econf \
- --disable-gcs \
- --disable-plugins \
- --disable-s3 \
- $(use_enable bzip2 bz2) \
- $(use_enable curl libcurl) \
- $(use_enable lzma)
-}
-
-src_compile() {
- emake AR="$(tc-getAR)"
-}
-
-src_install() {
- default
-
- # doesn't use libtool, can't disable static libraries
- find "${ED}" -name '*.a' -delete || die
-}