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authorDavid Seifert <soap@gentoo.org>2023-09-09 21:26:35 +0200
committerDavid Seifert <soap@gentoo.org>2023-09-09 21:26:35 +0200
commit13d8c46929e01d11398b0d366fb775d8ca6cfb35 (patch)
tree8a638855e6d67144b54c05a01ae859ae13970855 /dev-lang
parentdev-lang/R: Stabilize 4.3.1 sparc, #913676 (diff)
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dev-lang/R: drop 4.3.0
Signed-off-by: David Seifert <soap@gentoo.org>
Diffstat (limited to 'dev-lang')
-rw-r--r--dev-lang/R/Manifest1
-rw-r--r--dev-lang/R/R-4.3.0.ebuild247
2 files changed, 0 insertions, 248 deletions
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index eba3d04375b7..8a29505056cc 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -1,3 +1,2 @@
-DIST R-4.3.0.tar.gz 34821768 BLAKE2B 3505c8357419355fddb8aadbf0952c492e3e38d649d6261478d6187c94ff71110089ec0933a31dd2f7258e58a1d0864a68cb4d7b6cdefc54e5add55d0d62db10 SHA512 7f9bc8360818d7fdf05e26a4213df01468669514a4c2ad62dee358f53dcfa05a71ee72241db91fed59574c26d7caee5d3e0717637e1666daec99446e42c07813
DIST R-4.3.1.tar.gz 34899964 BLAKE2B 7aaacad01ce59e2faa46c4b830c10d2df8e4a3a1d4f11cf2aa622ceb53876f1e702dff94a820ca954ec29f53d58fa7e135ef15e8257602c50f2642b0a0c0a86a SHA512 f571c378dbdd675e267ef4419bb1141198924dadc08297c93c8dff58504994604918b3e045bb7139ba473972a063a68ed1c7426f37d4e8208b79358561d34d77
DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 BLAKE2B 53338e4a1c4f68beb69247216e553dbcac47f660fbf032bfebf7a660e32d2cff5b11ed35411c52de7e1fd6e00bbf5b5ea19369a325fa0a38bd93d63dc3288cbd SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06
diff --git a/dev-lang/R/R-4.3.0.ebuild b/dev-lang/R/R-4.3.0.ebuild
deleted file mode 100644
index 54725bb77495..000000000000
--- a/dev-lang/R/R-4.3.0.ebuild
+++ /dev/null
@@ -1,247 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-inherit bash-completion-r1 autotools flag-o-matic fortran-2 toolchain-funcs
-
-# latest git commit for R bash completion:
-# https://github.com/deepayan/rcompletion
-BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
-
-DESCRIPTION="Language and environment for statistical computing and graphics"
-HOMEPAGE="https://www.r-project.org/"
-SRC_URI="
- mirror://cran/src/base/R-4/${P}.tar.gz
- https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
-
-LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
-SLOT="0"
-KEYWORDS="amd64 arm64 ~hppa ~ia64 ~loong sparc ~x86 ~amd64-linux ~x86-linux"
-IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
-
-REQUIRED_USE="
- png? ( || ( cairo X ) )
- jpeg? ( || ( cairo X ) )
- tiff? ( || ( cairo X ) )"
-RESTRICT="
- minimal? ( test )
- !test? ( test )"
-
-# At least one package installation in the test suite requires TeX,
-# and will fail without it (bug #718056).
-DEPEND="
- app-arch/bzip2
- app-arch/xz-utils
- app-text/ghostscript-gpl
- dev-libs/libpcre2:=
- >=dev-libs/tre-0.8.0_p20210321[approx]
- net-misc/curl
- virtual/blas
- sys-libs/zlib[minizip]
- || (
- sys-apps/coreutils
- app-misc/realpath
- )
- cairo? (
- x11-libs/cairo:=[X=]
- x11-libs/pango:=
- )
- icu? ( dev-libs/icu:= )
- jpeg? ( media-libs/libjpeg-turbo:= )
- kernel_linux? ( net-libs/libtirpc )
- lapack? ( virtual/lapack )
- perl? ( dev-lang/perl )
- png? ( media-libs/libpng:= )
- readline? ( sys-libs/readline:= )
- tiff? ( media-libs/tiff:= )
- tk? ( dev-lang/tk:= )
- X? (
- x11-libs/libXmu
- x11-libs/libXt
- )"
-RDEPEND="${DEPEND}
- java? ( >=virtual/jre-1.8:* )"
-BDEPEND="
- virtual/pkgconfig
- doc? (
- virtual/latex-base
- dev-texlive/texlive-fontsrecommended
- )
- test? ( virtual/latex-base )"
-
-PATCHES=(
- "${FILESDIR}"/R-4.3.0-parallel.patch
- "${FILESDIR}"/R-4.3.0-no-LDFLAGS-in-libR-pkg-config.patch
- "${FILESDIR}"/R-4.3.0-no-gzip-doc.patch
-)
-
-# false positive, the linking step fails (as it should)
-QA_CONFIG_IMPL_DECL_SKIP=( iconvlist )
-
-pkg_pretend() {
- [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
-}
-
-pkg_setup() {
- if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
- tc-check-openmp
- FORTRAN_NEED_OPENMP=1
- fi
-
- fortran-2_pkg_setup
-
- # avoid using existing R installation
- unset R_HOME
-}
-
-src_prepare() {
- default
-
- # fix packages.html for doc (gentoo bug #205103)
- sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
- -i src/library/tools/R/Rd.R || die
-
- # fix Rscript path when installed (gentoo bug #221061)
- sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EPREFIX}/usr/$(get_libdir)/${PN}\"':" \
- -i src/unix/Makefile.in || die "sed unix Makefile failed"
-
- # fix HTML links to manual (gentoo bug #273957)
- sed -e 's:\.\./manual/:manual/:g' \
- -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
-
- use lapack &&
- export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
-
- use perl &&
- export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
-
- # don't search /usr/local
- sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
-
- # Fix for Darwin (macOS)
- if use prefix; then
- if [[ ${CHOST} == *-darwin* ]] ; then
- sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
- -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
- -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
- -e "/SHLIB_EXT/s/\.so/.dylib/" \
- -i configure.ac || die
- # sort of "undo" 2.14.1-rmath-shared.patch
- sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EPREFIX}/usr/$(get_libdir)/libRmath.dylib:" \
- -i src/nmath/standalone/Makefile.in || die
- else
- append-ldflags -Wl,-rpath="${EPREFIX}/usr/$(get_libdir)/R/lib"
- fi
- fi
-
- AT_M4DIR=m4 eautoreconf
-}
-
-src_configure() {
- filter-ldflags -Wl,-Bdirect -Bdirect
-
- econf \
- --enable-byte-compiled-packages \
- --enable-R-shlib \
- --disable-R-framework \
- --disable-R-static-lib \
- --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
- rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
- --with-system-tre \
- $(use_enable java) \
- $(use_enable lto lto R) \
- $(use_enable nls) \
- $(use_enable openmp) \
- $(use_enable profile R-profiling) \
- $(use_enable profile memory-profiling) \
- $(use_with cairo) \
- $(use_with icu ICU) \
- $(use_with jpeg jpeglib) \
- $(use_with lapack) \
- $(use_with !minimal recommended-packages) \
- $(use_with png libpng) \
- $(use_with readline) \
- $(use_with tiff libtiff) \
- $(use_with tk tcltk) \
- $(use_with tk tk-config "${ESYSROOT}"/usr/$(get_libdir)/tkConfig.sh) \
- $(use_with tk tcl-config "${ESYSROOT}"/usr/$(get_libdir)/tclConfig.sh) \
- $(use_with X x)
-}
-
-src_compile() {
- export VARTEXFONTS="${T}"/fonts
- emake AR="$(tc-getAR)"
- emake -C src/nmath/standalone shared AR="$(tc-getAR)"
- use doc && emake info pdf
-}
-
-src_install() {
- default
- emake -C src/nmath/standalone DESTDIR="${D}" install
-
- if use doc; then
- emake DESTDIR="${D}" install-info install-pdf
- dosym ../manual /usr/share/doc/${PF}/html/manual
- fi
-
- newenvd - 99R <<-_EOF_
- LDPATH="${EPREFIX}/usr/$(get_libdir)/${PN}/lib"
- R_HOME="${EPREFIX}/usr/$(get_libdir)/${PN}"
- _EOF_
-
- newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
- # The buildsystem has a different understanding of install_names than
- # we require. Since it builds modules like shared objects (wrong), many
- # objects (all modules) get an incorrect install_name. Fixing the build
- # system here is not really trivial.
- if [[ ${CHOST} == *-darwin* ]] ; then
- local mod
- pushd "${ED}"/usr/$(get_libdir)/R >/dev/null || die
- for mod in $(find . -name "*.dylib") ; do
- mod=${mod#./}
- install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" "${mod}"
- done
- popd >/dev/null || die
- fi
-
- # Users are encouraged to access some of the the R documentation
- # interactively, through functions like "contributors()" that
- # tries to open the "AUTHORS" file. Other files can be accessed
- # by name with RShowDoc(), and the documentation for e.g. license()
- # and RShowDoc() suggests a few of these names. Here we try to
- # collect as many names as possible that a user might actually
- # try to view through R, because if we don't decompress them,
- # then R doesn't know what to do with 'em. Bug #556706.
- local INTERACTIVE_DOCS=(
- AUTHORS
- COPYING
- FAQ
- NEWS
- THANKS
- )
-
- # Other data sources that are shipped as "documentation," but which
- # need to be accessible via their original unmolested filenames.
- local INTERACTIVE_DATA=(
- BioC_mirrors.csv
- CRAN_mirrors.csv
- KEYWORDS.db
- NEWS.rds
- )
-
- local f NOCOMPRESS_DOCS=( "${INTERACTIVE_DOCS[@]}" "${INTERACTIVE_DATA[@]}" )
- for f in "${NOCOMPRESS_DOCS[@]}"; do
- docompress -x /usr/share/doc/${PF}/${f}
- done
-
- # Finally, an extra copy of this started showing up at some point...
- rm "${ED}"/usr/$(get_libdir)/R/COPYING || die
-}
-
-pkg_postinst() {
- if use java; then
- einfo "Re-initializing java paths for ${P}"
- R CMD javareconf
- fi
-}