dev-python/numpy: use upstream variant of fix-scalartypes.patch

Should be the same functionally but let's do this just in case (upstreamed
version handles a few more types & is a bit cleaner as using numpy typedefs too).

Signed-off-by: Sam James <sam@gentoo.org>

1 files changed, 159 insertions, 0 deletions

diff --git a/dev-python/numpy/numpy-1.25.1-r3.ebuild b/dev-python/numpy/numpy-1.25.1-r3.ebuild
new file mode 100644
index 000000000000..1b46bf5e470b
--- /dev/null
+++ b/dev-python/numpy/numpy-1.25.1-r3.ebuild
@@ -0,0 +1,159 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DISTUTILS_EXT=1
+DISTUTILS_USE_PEP517=meson-python
+PYTHON_COMPAT=( python3_{10..12} pypy3 )
+PYTHON_REQ_USE="threads(+)"
+FORTRAN_NEEDED=lapack
+
+inherit distutils-r1 flag-o-matic fortran-2 multiprocessing pypi toolchain-funcs
+
+DESCRIPTION="Fast array and numerical python library"
+HOMEPAGE="
+	https://numpy.org/
+	https://github.com/numpy/numpy/
+	https://pypi.org/project/numpy/
+"
+
+LICENSE="BSD"
+SLOT="0"
+IUSE="lapack"
+if [[ ${PV} != *_rc* ]] ; then
+	KEYWORDS="~amd64 ~arm ~arm64 ~hppa ~ia64 ~loong ~ppc ~ppc64 ~riscv ~s390 ~sparc ~x86"
+fi
+
+RDEPEND="
+	lapack? (
+		>=virtual/cblas-3.8
+		>=virtual/lapack-3.8
+	)
+"
+BDEPEND="
+	${RDEPEND}
+	>=dev-util/meson-1.1.0
+	>=dev-python/cython-0.29.30[${PYTHON_USEDEP}]
+	lapack? (
+		virtual/pkgconfig
+	)
+	test? (
+		$(python_gen_cond_dep '
+			>=dev-python/cffi-1.14.0[${PYTHON_USEDEP}]
+		' 'python*')
+		dev-python/charset-normalizer[${PYTHON_USEDEP}]
+		>=dev-python/hypothesis-5.8.0[${PYTHON_USEDEP}]
+		dev-python/pytest-xdist[${PYTHON_USEDEP}]
+		>=dev-python/pytz-2019.3[${PYTHON_USEDEP}]
+	)
+"
+
+PATCHES=(
+	"${FILESDIR}"/${PN}-1.25.0_rc1-meson-pyproject.toml.patch
+	"${FILESDIR}"/${PN}-1.25.0-skip-python3.12-irrelevant-tests.patch
+	"${FILESDIR}"/${PN}-1.25.1-fix-scalartypes.patch
+)
+
+distutils_enable_tests pytest
+
+python_prepare_all() {
+	append-flags -fno-strict-aliasing
+
+	distutils-r1_python_prepare_all
+
+	# TODO: Please drop once 1.25.0_rc1-meson-pyproject.toml.patch is gone
+	sed -i -e "s:version = \"2.0.0.dev0\":version = \"${PV}\":" pyproject.toml || die
+}
+
+python_configure_all() {
+	DISTUTILS_ARGS=(
+		-Dblas=$(usev lapack cblas)
+		-Dlapack=$(usev lapack lapack)
+	)
+}
+
+python_test() {
+	local EPYTEST_DESELECT=(
+		# very disk-and-memory-hungry
+		lib/tests/test_io.py::test_large_zip
+
+		# precision problems
+		core/tests/test_umath_accuracy.py::TestAccuracy::test_validate_transcendentals
+
+		# runs the whole test suite recursively, that's just crazy
+		core/tests/test_mem_policy.py::test_new_policy
+
+		# XXX: I've no idea why this ends up being needed in deselect and not ignore
+		typing/tests/test_typing.py
+	)
+
+	if [[ ${EPYTHON} == pypy3 ]]; then
+		EPYTEST_DESELECT+=(
+			# TODO: crashed
+			lib/tests/test_histograms.py::TestHistogram::test_big_arrays
+		)
+	fi
+
+	if use arm && [[ $(uname -m || echo "unknown") == "armv8l" ]] ; then
+		# Degenerate case of arm32 chroot on arm64, bug #774108
+		EPYTEST_DESELECT+=(
+			core/tests/test_cpu_features.py::Test_ARM_Features::test_features
+		)
+	fi
+
+	if use x86 ; then
+		EPYTEST_DESELECT+=(
+			# https://github.com/numpy/numpy/issues/18388
+			core/tests/test_umath.py::TestRemainder::test_float_remainder_overflow
+			# https://github.com/numpy/numpy/issues/18387
+			random/tests/test_generator_mt19937.py::TestRandomDist::test_pareto
+			# more precision problems
+			core/tests/test_einsum.py::TestEinsum::test_einsum_sums_int16
+		)
+	fi
+
+	if use hppa ; then
+		EPYTEST_DESELECT+=(
+			# TODO: Get selectedrealkind updated!
+			# bug #907228
+			# https://github.com/numpy/numpy/issues/3424 (https://github.com/numpy/numpy/issues/3424#issuecomment-412369029)
+			# https://github.com/numpy/numpy/pull/21785
+			f2py/tests/test_kind.py::TestKind::test_real
+			f2py/tests/test_kind.py::TestKind::test_quad_precision
+		)
+	fi
+
+	if [[ $(tc-endian) == "big" ]] ; then
+		# https://github.com/numpy/numpy/issues/11831 and bug #707116
+		EPYTEST_DESELECT+=(
+			'f2py/tests/test_return_character.py::TestFReturnCharacter::test_all_f77[s1]'
+			'f2py/tests/test_return_character.py::TestFReturnCharacter::test_all_f90[t1]'
+			'f2py/tests/test_return_character.py::TestFReturnCharacter::test_all_f90[s1]'
+			'f2py/tests/test_return_character.py::TestFReturnCharacter::test_all_f77[t1]'
+			f2py/tests/test_kind.py::TestKind::test_int
+		)
+	fi
+
+	case "${ABI}" in
+		alpha|arm|hppa|m68k|o32|ppc|s390|sh|sparc|x86)
+			EPYTEST_DESELECT+=(
+				# too large for 32-bit platforms
+				core/tests/test_ufunc.py::TestUfunc::test_identityless_reduction_huge_array
+				'core/tests/test_multiarray.py::TestDot::test_huge_vectordot[float64]'
+				'core/tests/test_multiarray.py::TestDot::test_huge_vectordot[complex128]'
+				lib/tests/test_histograms.py::TestHistogram::test_big_arrays
+			)
+			;;
+		*)
+			;;
+	esac
+
+	rm -rf numpy || die
+	epytest -n "$(makeopts_jobs)" --pyargs numpy
+}
+
+python_install_all() {
+	local DOCS=( LICENSE.txt README.md THANKS.txt )
+	distutils-r1_python_install_all
+}