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author | Michał Górny <mgorny@gentoo.org> | 2020-02-07 18:56:15 +0100 |
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committer | Michał Górny <mgorny@gentoo.org> | 2020-02-09 17:35:15 +0100 |
commit | 4394f8b4a2879971798e2bb96736b3c4dec092f0 (patch) | |
tree | 1c495859e3d75117927cdbfe321ec68aa0344525 /sci-biology/bcftools/bcftools-1.9-r2.ebuild | |
parent | net-wireless/wifi-radar: Switch to PYTHON_MULTI_USEDEP API (diff) | |
download | gentoo-4394f8b4a2879971798e2bb96736b3c4dec092f0.tar.gz gentoo-4394f8b4a2879971798e2bb96736b3c4dec092f0.tar.bz2 gentoo-4394f8b4a2879971798e2bb96736b3c4dec092f0.zip |
sci-biology/bcftools: Switch to PYTHON_MULTI_USEDEP API
Signed-off-by: Michał Górny <mgorny@gentoo.org>
Diffstat (limited to 'sci-biology/bcftools/bcftools-1.9-r2.ebuild')
-rw-r--r-- | sci-biology/bcftools/bcftools-1.9-r2.ebuild | 49 |
1 files changed, 49 insertions, 0 deletions
diff --git a/sci-biology/bcftools/bcftools-1.9-r2.ebuild b/sci-biology/bcftools/bcftools-1.9-r2.ebuild new file mode 100644 index 000000000000..eafe63a1ee54 --- /dev/null +++ b/sci-biology/bcftools/bcftools-1.9-r2.ebuild @@ -0,0 +1,49 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python3_6 ) + +inherit python-single-r1 + +DESCRIPTION="Utilities for variant calling and manipulating VCF and BCF files" +HOMEPAGE="http://www.htslib.org" +SRC_URI="https://github.com/samtools/${PN}/releases/download/${PV}/${P}.tar.bz2" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64 ~x86" +REQUIRED_USE="${PYTHON_REQUIRED_USE}" + +RDEPEND=" + dev-lang/perl + $(python_gen_cond_dep ' + dev-python/matplotlib[${PYTHON_MULTI_USEDEP}] + ') + =sci-libs/htslib-${PV}*:= + sys-libs/zlib:= + ${PYTHON_DEPS}" +DEPEND="${RDEPEND}" + +PATCHES=( + "${FILESDIR}"/${PN}-1.9-buildsystem.patch + "${FILESDIR}"/${PN}-1.9-fix-shebangs.patch +) + +src_prepare() { + default + + python_fix_shebang misc/{guess-ploidy,plot-roh}.py + + # remove bundled htslib + rm -r htslib-* || die +} + +src_configure() { + econf \ + --disable-bcftools-plugins \ + --disable-libgsl \ + --disable-configure-htslib \ + --with-htslib=system +} |