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| author |   David Seifert <soap@gentoo.org> | 2016-09-25 00:47:39 +0200 |
|---|---|---|
| committer | David Seifert <soap@gentoo.org> | 2016-09-25 00:55:37 +0200 |
| commit | c8c95dc5616fe51e1fffe9f875556a5ff14be39e (patch) | |
| tree | a24cc25241c20241b810c32b3d334878a05d045a /sci-biology/bedtools/bedtools-2.26.0.ebuild | |
| parent | dev-python/six: run pkg_preinst in a temporary directory (diff) | |
| download | gentoo-c8c95dc5616fe51e1fffe9f875556a5ff14be39e.tar.gz gentoo-c8c95dc5616fe51e1fffe9f875556a5ff14be39e.tar.bz2 gentoo-c8c95dc5616fe51e1fffe9f875556a5ff14be39e.zip | |
sci-biology/bedtools: Version bump to 2.26.0
Gentoo-bug: 594994
* EAPI=6
* Make buildsystem output verbose
* Inherit 'python-any-r1', due to python script
* Add dependencies for test suite
* Properly set CXX and CXXFLAGS
Package-Manager: portage-2.3.1
Diffstat (limited to 'sci-biology/bedtools/bedtools-2.26.0.ebuild')
| -rw-r--r-- | sci-biology/bedtools/bedtools-2.26.0.ebuild | 42 |
1 files changed, 42 insertions, 0 deletions
diff --git a/sci-biology/bedtools/bedtools-2.26.0.ebuild b/sci-biology/bedtools/bedtools-2.26.0.ebuild new file mode 100644 index 000000000000..feddd87ef3a5 --- /dev/null +++ b/sci-biology/bedtools/bedtools-2.26.0.ebuild @@ -0,0 +1,42 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +PYTHON_COMPAT=( python{2_7,3_4,3_5} ) + +inherit flag-o-matic python-any-r1 toolchain-funcs + +DESCRIPTION="Tools for manipulation and analysis of BED, GFF/GTF, VCF, SAM/BAM file formats" +HOMEPAGE="https://bedtools.readthedocs.io/" +SRC_URI="https://github.com/arq5x/${PN}2/releases/download/v${PV}/${P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~x86 ~amd64" +IUSE="test" + +DEPEND="${PYTHON_DEPS} + test? ( + sci-libs/htslib + sci-biology/samtools + )" + +S="${WORKDIR}/${PN}2" + +DOCS=( README.md RELEASE_HISTORY ) +PATCHES=( "${FILESDIR}/${PN}-2.26.0-fix-buildsystem.patch" ) + +src_configure() { + append-lfs-flags + export prefix="${EPREFIX}/usr" + tc-export AR CXX +} + +src_install() { + default + + insinto /usr/share/${PN} + doins -r genomes +} |