sci-biology/bioperl-db: EAPI6/-R1 Bump

- Test infa overhauled slightly
- EAPI6ified
- More test changes planned
- -r1 bump mostly for double-safety around EAPI6 changes

Package-Manager: Portage-2.3.6, Repoman-2.3.2

1 files changed, 61 insertions, 0 deletions

diff --git a/sci-biology/bioperl-db/bioperl-db-1.6.9-r1.ebuild b/sci-biology/bioperl-db/bioperl-db-1.6.9-r1.ebuild
new file mode 100644
index 000000000000..fd3a4280fa03
--- /dev/null
+++ b/sci-biology/bioperl-db/bioperl-db-1.6.9-r1.ebuild
@@ -0,0 +1,61 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+BIOPERL_RELEASE=1.6.9
+
+DIST_NAME=BioPerl-DB
+DIST_AUTHOR=CJFIELDS
+DIST_VERSION=1.006900
+inherit perl-module
+
+DESCRIPTION="Perl tools for bioinformatics - Perl API that accesses the BioSQL schema"
+HOMEPAGE="http://www.bioperl.org/"
+
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="test"
+
+DIST_TEST="do" # Parallelism probably bad
+
+RDEPEND="
+	>=sci-biology/bioperl-${PV}
+	dev-perl/DBD-mysql
+	dev-perl/DBI
+	sci-biology/biosql"
+DEPEND="${RDEPEND}
+	dev-perl/Module-Build
+	test? (
+		dev-perl/Data-Stag
+		dev-perl/Sub-Uplevel
+		dev-perl/Test-Warn
+		dev-perl/Test-Exception
+		virtual/perl-Test-Simple
+	)
+"
+
+src_prepare() {
+	if use test; then
+		eapply "${FILESDIR}/${PN}-1.6.9-db.patch"
+		einfo "Using the following configuration details for test database:"
+		einfo "  GENTOO_DB_TEST_HOST     : ${GENTOO_DB_TEST_HOST:=localhost}"
+		einfo "  GENTOO_DB_TEST_USER     : ${GENTOO_DB_TEST_USER:=portage}"
+		einfo "  GENTOO_DB_TEST_PORT     : ${GENTOO_DB_TEST_PORT:=3306}"
+		einfo "  GENTOO_DB_TEST_PASSWOWRD: ${GENTOO_DB_TEST_PASSWORD:=sekrit}"
+		einfo "  GENTOO_DB_TEST_DATABASE : ${GENTOO_DB_TEST_DB:=biosql_test}"
+		einfo "Please ensure the relevant mysql database is configured and/or tweak"
+		einfo "environment variables to suit"
+		export GENTOO_DB_TEST_HOST GENTOO_DB_TEST_USER GENTOO_DB_TEST_PORT GENTOO_DB_TEST_PASSWORD GENTOO_DB_TEST_DB
+	fi
+	perl-module_src_prepare
+}
+src_install() {
+	mydoc="AUTHORS BUGS FAQ"
+	perl-module_src_install
+}
+src_test() {
+	einfo "Removing bundled test libraries t/lib"
+	rm -r "${S}/t/lib" || die "Cannot remove t/lib"
+	perl-module_src_test
+}