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author | David Seifert <soap@gentoo.org> | 2017-12-25 10:57:08 +0100 |
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committer | David Seifert <soap@gentoo.org> | 2017-12-25 17:08:50 +0100 |
commit | 6d8d74d327137358ffb5e4dad142b9c8b280f71c (patch) | |
tree | 8125fe416af617bc9108863bb27a3888c1969deb /sci-biology/bowtie/bowtie-1.1.2.ebuild | |
parent | dev-python/pyrsistent: stable 0.13.0 for sparc, bug #641208 (diff) | |
download | gentoo-6d8d74d327137358ffb5e4dad142b9c8b280f71c.tar.gz gentoo-6d8d74d327137358ffb5e4dad142b9c8b280f71c.tar.bz2 gentoo-6d8d74d327137358ffb5e4dad142b9c8b280f71c.zip |
sci-biology/bowtie: Remove old
Closes: https://bugs.gentoo.org/630140
Package-Manager: Portage-2.3.19, Repoman-2.3.6
Closes: https://github.com/gentoo/gentoo/pull/6626
Diffstat (limited to 'sci-biology/bowtie/bowtie-1.1.2.ebuild')
-rw-r--r-- | sci-biology/bowtie/bowtie-1.1.2.ebuild | 54 |
1 files changed, 0 insertions, 54 deletions
diff --git a/sci-biology/bowtie/bowtie-1.1.2.ebuild b/sci-biology/bowtie/bowtie-1.1.2.ebuild deleted file mode 100644 index 1ada8a0fdc2b..000000000000 --- a/sci-biology/bowtie/bowtie-1.1.2.ebuild +++ /dev/null @@ -1,54 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit eutils toolchain-funcs - -DESCRIPTION="Popular short read aligner for Next-generation sequencing data" -HOMEPAGE="http://bowtie-bio.sourceforge.net/" -SRC_URI="mirror://sourceforge/bowtie-bio/${P}-src.zip" - -LICENSE="Artistic" -SLOT="1" -KEYWORDS="amd64 x86 ~x64-macos" - -IUSE="examples +tbb" - -DEPEND="app-arch/unzip - tbb? ( dev-cpp/tbb )" -RDEPEND="" - -DOCS=( AUTHORS NEWS TUTORIAL doc/README ) -HTML_DOCS=( doc/{manual.html,style.css} ) - -src_prepare() { - # always include tinythread.cpp - epatch "${FILESDIR}/${P}-tbb-tinythread-missing.patch" -} - -src_compile() { - emake \ - CC="$(tc-getCC)" \ - CPP="$(tc-getCXX)" \ - CFLAGS="" \ - CXXFLAGS="" \ - EXTRA_FLAGS="${LDFLAGS}" \ - RELEASE_FLAGS="${CXXFLAGS}" \ - WITH_TBB="$(usex tbb 1 0)" -} - -src_install() { - dobin ${PN} ${PN}-* - - exeinto /usr/libexec/${PN} - doexe scripts/* - - newman MANUAL ${PN}.1 - einstalldocs - - if use examples; then - insinto /usr/share/${PN} - doins -r genomes indexes - fi -} |