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author | David Seifert <soap@gentoo.org> | 2017-12-25 10:57:08 +0100 |
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committer | David Seifert <soap@gentoo.org> | 2017-12-25 17:08:50 +0100 |
commit | 6d8d74d327137358ffb5e4dad142b9c8b280f71c (patch) | |
tree | 8125fe416af617bc9108863bb27a3888c1969deb /sci-biology/bowtie/bowtie-2.2.6.ebuild | |
parent | dev-python/pyrsistent: stable 0.13.0 for sparc, bug #641208 (diff) | |
download | gentoo-6d8d74d327137358ffb5e4dad142b9c8b280f71c.tar.gz gentoo-6d8d74d327137358ffb5e4dad142b9c8b280f71c.tar.bz2 gentoo-6d8d74d327137358ffb5e4dad142b9c8b280f71c.zip |
sci-biology/bowtie: Remove old
Closes: https://bugs.gentoo.org/630140
Package-Manager: Portage-2.3.19, Repoman-2.3.6
Closes: https://github.com/gentoo/gentoo/pull/6626
Diffstat (limited to 'sci-biology/bowtie/bowtie-2.2.6.ebuild')
-rw-r--r-- | sci-biology/bowtie/bowtie-2.2.6.ebuild | 60 |
1 files changed, 0 insertions, 60 deletions
diff --git a/sci-biology/bowtie/bowtie-2.2.6.ebuild b/sci-biology/bowtie/bowtie-2.2.6.ebuild deleted file mode 100644 index 29826473a3b3..000000000000 --- a/sci-biology/bowtie/bowtie-2.2.6.ebuild +++ /dev/null @@ -1,60 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit eutils toolchain-funcs - -DESCRIPTION="Popular short read aligner for Next-generation sequencing data" -HOMEPAGE="http://bowtie-bio.sourceforge.net/bowtie2/" -SRC_URI="mirror://sourceforge/project/${PN}-bio/${PN}2/${PV}/${PN}2-${PV}-source.zip" - -LICENSE="GPL-3" -SLOT="2" -KEYWORDS="amd64 x86" - -IUSE="examples cpu_flags_x86_sse2 +tbb" - -RDEPEND="dev-lang/perl" -DEPEND="${RDEPEND} - app-arch/unzip - tbb? ( dev-cpp/tbb )" - -S="${WORKDIR}/${PN}2-${PV}" - -DOCS=( AUTHORS NEWS TUTORIAL ) -HTML_DOCS=( doc/{manual.html,style.css} ) - -pkg_pretend() { - if ! use cpu_flags_x86_sse2 ; then - eerror "This package requires a CPU supporting the SSE2 instruction set." - die "SSE2 support missing" - fi -} - -src_compile() { - emake \ - CC="$(tc-getCC)" \ - CPP="$(tc-getCXX)" \ - CXX="$(tc-getCXX)" \ - CFLAGS="" \ - CXXFLAGS="" \ - EXTRA_FLAGS="${LDFLAGS}" \ - RELEASE_FLAGS="${CXXFLAGS} -msse2" \ - WITH_TBB="$(usex tbb 1 0)" -} - -src_install() { - dobin ${PN}2 ${PN}2-* - - exeinto /usr/libexec/${PN}2 - doexe scripts/* - - newman MANUAL ${PN}2.1 - einstalldocs - - if use examples; then - insinto /usr/share/${PN}2 - doins -r example - fi -} |