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| author |   David Seifert <soap@gentoo.org> | 2016-04-09 20:26:28 +0200 |
|---|---|---|
| committer | David Seifert <soap@gentoo.org> | 2016-04-09 20:57:05 +0200 |
| commit | 1e3f5d88f730c5d04b64095114d2e48c1ec4ba58 (patch) | |
| tree | f067251bfa8ccc7481541eb1a5cab6b955fc9172 /sci-biology/bowtie/files/bowtie-1.1.2-seqan-popcount.patch | |
| parent | sci-biology/seqan: SLOT 1.4 and 2.1, allow for parallel installation (diff) | |
| download | gentoo-1e3f5d88f730c5d04b64095114d2e48c1ec4ba58.tar.gz gentoo-1e3f5d88f730c5d04b64095114d2e48c1ec4ba58.tar.bz2 gentoo-1e3f5d88f730c5d04b64095114d2e48c1ec4ba58.zip | |
sci-biology/bowtie: unbundle SeqAn, import Debian patches
* EAPI=6
Package-Manager: portage-2.2.28
Diffstat (limited to 'sci-biology/bowtie/files/bowtie-1.1.2-seqan-popcount.patch')
| -rw-r--r-- | sci-biology/bowtie/files/bowtie-1.1.2-seqan-popcount.patch | 24 |
1 files changed, 24 insertions, 0 deletions
diff --git a/sci-biology/bowtie/files/bowtie-1.1.2-seqan-popcount.patch b/sci-biology/bowtie/files/bowtie-1.1.2-seqan-popcount.patch new file mode 100644 index 000000000000..52cb4f496521 --- /dev/null +++ b/sci-biology/bowtie/files/bowtie-1.1.2-seqan-popcount.patch @@ -0,0 +1,24 @@ +Description: Use SeqAn 1.4's seqan::popCount() function instead of own function +Author: Ognyan Kulev <ogi@debian.org> +Last-Update: 2014-03-08 +--- +This patch header follows DEP-3: http://dep.debian.net/deps/dep3/ +--- a/diff_sample.h ++++ b/diff_sample.h +@@ -476,6 +476,8 @@ static String<T> getDeltaMap(T v, const + return amap; + } + ++// Debian: Use seqan::popCount ++#if 0 + /** + * Return population count (count of all bits set to 1) of i. + */ +@@ -488,6 +490,7 @@ static unsigned int popCount(T i) { + } + return cnt; + } ++#endif + + /** + * Calculate log-base-2 of i |