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| author |   Robin H. Johnson <robbat2@gentoo.org> | 2015-08-08 13:49:04 -0700 |
|---|---|---|
| committer | Robin H. Johnson <robbat2@gentoo.org> | 2015-08-08 17:38:18 -0700 |
| commit | 56bd759df1d0c750a065b8c845e93d5dfa6b549d (patch) | |
| tree | 3f91093cdb475e565ae857f1c5a7fd339e2d781e /sci-biology/mauve | |
| download | gentoo-56bd759df1d0c750a065b8c845e93d5dfa6b549d.tar.gz gentoo-56bd759df1d0c750a065b8c845e93d5dfa6b549d.tar.bz2 gentoo-56bd759df1d0c750a065b8c845e93d5dfa6b549d.zip | |
proj/gentoo: Initial commit
This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.
This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.
Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed
Diffstat (limited to 'sci-biology/mauve')
| -rw-r--r-- | sci-biology/mauve/mauve-9999.ebuild | 54 | ||||
| -rw-r--r-- | sci-biology/mauve/metadata.xml | 5 |
2 files changed, 59 insertions, 0 deletions
diff --git a/sci-biology/mauve/mauve-9999.ebuild b/sci-biology/mauve/mauve-9999.ebuild new file mode 100644 index 000000000000..1c3446707e4d --- /dev/null +++ b/sci-biology/mauve/mauve-9999.ebuild @@ -0,0 +1,54 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI="2" + +ESVN_REPO_URI="https://mauve.svn.sourceforge.net/svnroot/mauve/mauve/trunk" + +WANT_ANT_TASKS="ant-nodeps" +EANT_GENTOO_CLASSPATH="biojava,zeus-jscl,dbus-java" +JAVA_ANT_REWRITE_CLASSPATH="true" +JAVA_PKG_BSFIX_NAME="build.xml" + +inherit subversion java-pkg-2 java-ant-2 eutils + +DESCRIPTION="Multiple genome alignment with large-scale evolutionary events (GUI component)" +HOMEPAGE="http://gel.ahabs.wisc.edu/mauve/" +SRC_URI="" + +LICENSE="GPL-2" +SLOT="0" +IUSE="doc" +KEYWORDS="" + +CDEPEND="~sci-biology/biojava-1.6 + >=dev-java/dbus-java-2.5.1 + ~dev-java/zeus-jscl-1.08 + dev-java/ant-nodeps" +RDEPEND=">=virtual/jre-1.5 + sci-biology/mauvealigner + ${CDEPEND}" +DEPEND=">=virtual/jdk-1.5 + media-gfx/icoutils + ${CDEPEND}" + +S="${WORKDIR}" + +java_prepare() { + find -name '*.jar' -not -name 'jarbundler*' -print -delete + perl -i -ne 'print unless /<dmg/ or /<taskdef.+name="dmg"/../<\/taskdef>/' build.xml + perl -i -ne 'print unless /<ssh/../<\/ssh/ or /<taskdef.+name="ssh"/../<\/taskdef>/' build.xml + perl -i -ne 'print unless /<retroweaver/ or /<taskdef.+name="retroweaver"/../<\/taskdef>/' build.xml +} + +src_install() { + java-pkg_dojar Mauve.jar + + java-pkg_dolauncher Mauve --main org.gel.mauve.gui.Mauve + + icotool -x win32/mauve.ico + insinto /usr/share/pixmaps + newins mauve_4_48x48x32.png Mauve.png + make_desktop_entry Mauve Mauve Mauve +} diff --git a/sci-biology/mauve/metadata.xml b/sci-biology/mauve/metadata.xml new file mode 100644 index 000000000000..f17a827e3101 --- /dev/null +++ b/sci-biology/mauve/metadata.xml @@ -0,0 +1,5 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-biology</herd> +</pkgmetadata> |